PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100241360021
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family LBD
Protein Properties Length: 158aa    MW: 17798.5 Da    PI: 7.3906
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100241360021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601383.3e-4381071100
                        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 
                                   +Ca+Ck+lrr+CakdC++apyfp ++p+kfa+vhk+FGasnv+k+l++l+ ++r da+ slvyeA+ar+rdPvyG+vg i+
  Ote100241360021|100241360021   8 PCASCKLLRRRCAKDCIFAPYFPPDDPQKFAIVHKVFGASNVSKMLQELHVDQRGDAVCSLVYEANARMRDPVYGCVGAIS 88 
                                   7******************************************************************************** PP

                        DUF260  82 klqqqleqlkaelallkee 100
                                    lq+q++ql+ +la++++e
  Ote100241360021|100241360021  89 YLQNQVSQLQMQLAMAEAE 107
                                   **************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.197108IPR004883Lateral organ boundaries, LOB
PfamPF031955.7E-438105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MGGGGSSPCA SCKLLRRRCA KDCIFAPYFP PDDPQKFAIV HKVFGASNVS KMLQELHVDQ  60
RGDAVCSLVY EANARMRDPV YGCVGAISYL QNQVSQLQMQ LAMAEAEILC IQMQQEQQHQ  120
PLMPNQDHHK SILLATNNFT NLQNYVMQDP LKRESLWI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-4741097112LOB family transfactor Ramosa2.1
5ly0_B7e-4741097112LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080777.19e-90LOB domain-containing protein 12
SwissprotQ8LBW37e-75LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A2G9I6Q44e-87A0A2G9I6Q4_9LAMI; Uncharacterized protein
STRINGVIT_06s0004g07200.t014e-84(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]