PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100240800031 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 83aa MW: 9442.25 Da PI: 10.4754 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 22.2 | 1.8e-07 | 25 | 55 | 19 | 49 |
HHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 19 gilKKAeELSvLCdaevaviifsstgklyey 49 g+ KK + L +LC++e+++ii +++++ + Ote100240800031|100240800031 25 GLRKKLHQLTTLCAVEACMIINGPQNQNSVW 55 899*********************9986666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 9.082 | 1 | 45 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 0.0017 | 1 | 57 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.35E-12 | 2 | 71 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.8E-6 | 23 | 51 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 83 aa Download sequence Send to blast |
MGRAKLKMQL IEKEKSRMQX XXSDGLRKKL HQLTTLCAVE ACMIINGPQN QNSVWPHDNP 60 DQVGRMIAAY KSRSRELGGV KTY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011092692.1 | 7e-19 | agamous-like MADS-box protein AGL82 | ||||
TrEMBL | A0A4D8ZJF7 | 2e-19 | A0A4D8ZJF7_SALSN; Uncharacterized protein | ||||
STRING | Migut.B00770.1.p | 5e-16 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2457 | 22 | 53 |