PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100240600091

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 301aa MW: 34544.1 Da PI: 6.1717

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100240600091	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.5	8.5e-12	135	178	6	54
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk +K++ +iL +++Y+k+L Ote100240600091\|100240600091 135 LMAERRRRKRLNDRLSMLRSVVPKI-----TKMDRTSILGDTIDYMKEL 178 589*******************7.....6**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.472	129	178	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.46E-16	133	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-9	135	178	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.3E-12	135	184	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-14	136	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.17E-5	136	178	No hit	No description
CDD	cd04873	1.08E-4	227	267	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MEYYSKQQDF LEELLGLDYY IHQDFNTNIS CWNYSADHFP TSNKSADFSL PTHQNFNFPF 60 YSDTFADQLS PLEFSSISPN TYISSQTLPY TNSSSIFSHQ HAAMEPEPVF NVGFTHDPKR 120 KTKVKKISGQ PSKNLMAERR RRKRLNDRLS MLRSVVPKIT KMDRTSILGD TIDYMKELLD 180 RINNLQEEMN LGGYELGLLS IFKNAKPEEI FIRNSPKFEV ERRNLETRIE ICCSGRPGLL 240 LSTVTTLEAL GMDIEQCVIS CFNDFAMHAS CSEDLKQMAV LDSEDIKQAL FRNAGYGGRC 300 L

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021284667.1	1e-104	transcription factor bHLH93-like
Swissprot	Q9LSL1	7e-80	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A4D9BCW2	1e-125	A0A4D9BCW2_SALSN; Uncharacterized protein
STRING	XP_009772518.1	1e-103	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA789	24	97

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]