PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100240360101 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | LBD | ||||||||
Protein Properties | Length: 136aa MW: 15240.5 Da PI: 8.3324 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 114.5 | 6.9e-36 | 8 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrr+C++dC+++p fp+++p +fa vhk++Ga nv kll++lp + r +a+++l+yeA +r++dPvyG++g i+ Ote100240360101|100240360101 8 RCAACKHLRRRCPSDCIFSPFFPSDNPLRFASVHKIYGACNVAKLLQDLPAKWRAQAADTLCYEAYCRIKDPVYGCAGSIT 88 6******************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 l++ql+ ++ +la+l+++ Ote100240360101|100240360101 89 VLHHQLNAAEFQLATLEAQ 107 *************999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.791 | 7 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.2E-36 | 8 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
MHGMDSSRCA ACKHLRRRCP SDCIFSPFFP SDNPLRFASV HKIYGACNVA KLLQDLPAKW 60 RAQAADTLCY EAYCRIKDPV YGCAGSITVL HHQLNAAEFQ LATLEAQLQA IKNESNTVKL 120 NQHHQPTSCY TLPTLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-32 | 9 | 108 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-32 | 9 | 108 | 12 | 111 | LOB family transfactor Ramosa2.1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011098999.1 | 2e-52 | LOB domain-containing protein 23-like | ||||
Swissprot | P59467 | 6e-42 | LBD23_ARATH; LOB domain-containing protein 23 | ||||
TrEMBL | A0A4D9AY56 | 6e-53 | A0A4D9AY56_SALSN; Uncharacterized protein | ||||
STRING | evm.model.supercontig_1.339 | 3e-48 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5277 | 20 | 39 |