PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100240310071 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 221aa MW: 25767.7 Da PI: 6.8013 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 96.3 | 1.4e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+snrqvt+skRrngi+KKA+E+SvLCda+v+v+if+s+gk++e++s Ote100240310071|100240310071 9 KRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAQVSVVIFASSGKMHEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 68.2 | 2.7e-23 | 71 | 172 | 1 | 98 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqR.hllGedLesLslkeLqqLeqqLekslkkiRskKne...llleqi 77 y+k sgk+l++ak+e+l++e++++kke++++q e+R hl+Ged+++Ls+keL+ Le++Le+++++ ++k++e ++++++ Ote100240310071|100240310071 71 YHKLSGKRLWDAKHEHLDNEINRIKKENDSMQIELRlHLKGEDISTLSHKELMVLEEALENGITTLKAKQMEfvrMMKKHV 151 7899****************************87776**********************************8444578889 PP K-box 78 eelqkkekelqeenkaLrkkl 98 + ++++een++L kl Ote100240310071|100240310071 152 TTIPADSEMMEEENQNLLFKL 172 9999999********998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.394 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.9E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.91E-43 | 2 | 80 | No hit | No description |
SuperFamily | SSF55455 | 1.23E-36 | 2 | 96 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.8E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.7E-13 | 83 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.115 | 84 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MGRGKIEIKR IENSSNRQVT YSKRRNGIMK KAKEISVLCD AQVSVVIFAS SGKMHEFCSP 60 STTLVDMLDQ YHKLSGKRLW DAKHEHLDNE INRIKKENDS MQIELRLHLK GEDISTLSHK 120 ELMVLEEALE NGITTLKAKQ MEFVRMMKKH VTTIPADSEM MEEENQNLLF KLRQMHLDPM 180 EENVMEAQGV YDHQTVADYE AQQMPFAFRV QPMQPNLQER F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 2e-16 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6byy_B | 2e-16 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6byy_C | 2e-16 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6byy_D | 2e-16 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6bz1_A | 1e-16 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6bz1_B | 1e-16 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6bz1_C | 1e-16 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
6bz1_D | 1e-16 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the genetic control of flower development. Acts in conjunction with DEFICIENS (defA). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00080 | ChIP-seq | Transfer from AT5G20240 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011081947.1 | 1e-144 | floral homeotic protein GLOBOSA | ||||
Swissprot | Q03378 | 1e-135 | GLOB_ANTMA; Floral homeotic protein GLOBOSA | ||||
TrEMBL | A0A4D9AG25 | 1e-142 | A0A4D9AG25_SALSN; MADS-box transcription factor, plant | ||||
STRING | Migut.A00326.1.p | 1e-141 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4680 | 21 | 39 |
Publications ? help Back to Top | |||
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