PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ote100239950061 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 341aa MW: 38932.3 Da PI: 6.417 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 122.9 | 2.7e-38 | 39 | 163 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksg 81 ppG+rF P+deel+ yL+kk++g+ l++ +i+++ +++++P++L k+ + ++ +wyfF+ r++ky++gkr+ r ++ g Ote100239950061|100239950061 39 PPGYRFVPSDEELILGYLHKKIHGHILPI--HIHQICLTRTNPNSLTeKHPRIGDGDWYFFTWRNRKYPNGKRPDRGAEGG 117 9*************************999..7**************8556666899********************99*** PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +Wk t +k+v++ ++e +g ++tLvfy+g+ ++++kt+W+mheyr+ Ote100239950061|100239950061 118 FWKPTDGEKSVKV-GDEIIGYRNTLVFYEGKPKNAKKTRWTMHEYRI 163 *************.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 6.345 | 1 | 14 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.67E-46 | 36 | 179 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 45.685 | 38 | 180 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-22 | 39 | 163 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 341 aa Download sequence Send to blast |
MRLDDCVLCR VYQKASVAST SRKAEAAEED DNNSVNPYPP GYRFVPSDEE LILGYLHKKI 60 HGHILPIHIH QICLTRTNPN SLTEKHPRIG DGDWYFFTWR NRKYPNGKRP DRGAEGGFWK 120 PTDGEKSVKV GDEIIGYRNT LVFYEGKPKN AKKTRWTMHE YRIKESPSLD DCVLCRIYKS 180 AARPTASRRR RSSPNPNDNA VELQHQYCYN NEDQDPNINT SSFGESLAQD LLQDSLFFSM 240 EDLGLADADQ EMETQQMIVN PQPQAFGFNE STASTPTFGF DQSPQSSSTW SRCSRCWCPA 300 KSTSVSCSMC TWCSNNNATN ISFTDLLLNH IDNKEDEERK L |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-35 | 26 | 179 | 8 | 167 | NAC domain-containing protein 19 |
3swm_B | 2e-35 | 26 | 179 | 8 | 167 | NAC domain-containing protein 19 |
3swm_C | 2e-35 | 26 | 179 | 8 | 167 | NAC domain-containing protein 19 |
3swm_D | 2e-35 | 26 | 179 | 8 | 167 | NAC domain-containing protein 19 |
3swp_A | 2e-35 | 26 | 179 | 8 | 167 | NAC domain-containing protein 19 |
3swp_B | 2e-35 | 26 | 179 | 8 | 167 | NAC domain-containing protein 19 |
3swp_C | 2e-35 | 26 | 179 | 8 | 167 | NAC domain-containing protein 19 |
3swp_D | 2e-35 | 26 | 179 | 8 | 167 | NAC domain-containing protein 19 |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA746 | 24 | 103 |