PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100239260051

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

MYB_related

Protein Properties

Length: 601aa MW: 66958.2 Da PI: 5.5883

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100239260051	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.7	1.1e-07	483	531	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +W E +lvd+v+++G g+W+ I r Rt ++k++w+++l Ote100239260051\|100239260051 483 PWKLGEVVKLVDGVAKYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 531 67788889*******************9999************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.228	476	535	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.6E-12	478	535	IPR009057	Homeodomain-like
SMART	SM00717	2.9E-7	480	533	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	6.4E-15	482	535	IPR009057	Homeodomain-like
CDD	cd11660	1.19E-17	482	532	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0046686	Biological Process	response to cadmium ion
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 601 aa Download sequence Send to blast
METVVDMLGN EEARDEEFPS QDTADPVLYQ LVRGCYHFKE HQNIAPLLGL VLLSKARGCP 60 HLGRSQVDGN GRLVPATDDE VIAVEDLFED DKCVVTSIDS GQTLECSINY GSEPCEPKTA 120 EFEGSGQPQL EVLEVSAEKQ IMPSHTETDC IEVDVKHEDK ISKLVRNAID VSVCQSGSLD 180 GSSEYLDASN KDKTSTSSVD ADSKPKFSLL NGEIHLDNLS VKDLQETFRA TFGRKTSVKD 240 KQWLKRRIIM GLTNSCDFST TTLVIIDNRV IKKVKDETSQ SMDSSALVDC VVTSAVETDG 300 NPTTSHEKQI EAPIGNPVAI QSSIIQESND TDTEQRPVKR VRKPTRRYIE ELSENEFRDS 360 GAQIASLVEH PAYDQPSVEA YVRPIQHFGL DRRYLTRKDS LGGCGVQVPY VSRIRRSRPR 420 ENFTTLMPVA YSESCTVEAE KKTNQLEKEI KLKDKEPLKA NSDDEVVTVP TANGGMRRKH 480 HRPWKLGEVV KLVDGVAKYG AGRWSEIKRL AFASYSYRTS VDLKDKWRNL LRASMAESLT 540 GNGSSRKQAS VPIPAQILSR VRELADIQTQ VPPILSSSKL ERCNDSNKPV HVVDVHVSYF 600 E

Sequence ? help Back to Top

Protein Sequence Length: 601 aa Download sequence Send to blast

METVVDMLGN EEARDEEFPS QDTADPVLYQ LVRGCYHFKE HQNIAPLLGL VLLSKARGCP  60
HLGRSQVDGN GRLVPATDDE VIAVEDLFED DKCVVTSIDS GQTLECSINY GSEPCEPKTA  120
EFEGSGQPQL EVLEVSAEKQ IMPSHTETDC IEVDVKHEDK ISKLVRNAID VSVCQSGSLD  180
GSSEYLDASN KDKTSTSSVD ADSKPKFSLL NGEIHLDNLS VKDLQETFRA TFGRKTSVKD  240
KQWLKRRIIM GLTNSCDFST TTLVIIDNRV IKKVKDETSQ SMDSSALVDC VVTSAVETDG  300
NPTTSHEKQI EAPIGNPVAI QSSIIQESND TDTEQRPVKR VRKPTRRYIE ELSENEFRDS  360
GAQIASLVEH PAYDQPSVEA YVRPIQHFGL DRRYLTRKDS LGGCGVQVPY VSRIRRSRPR  420
ENFTTLMPVA YSESCTVEAE KKTNQLEKEI KLKDKEPLKA NSDDEVVTVP TANGGMRRKH  480
HRPWKLGEVV KLVDGVAKYG AGRWSEIKRL AFASYSYRTS VDLKDKWRNL LRASMAESLT  540
GNGSSRKQAS VPIPAQILSR VRELADIQTQ VPPILSSSKL ERCNDSNKPV HVVDVHVSYF  600
E

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011079786.1	0.0	uncharacterized protein LOC105163216 isoform X1
TrEMBL	A0A4D9BEG5	0.0	A0A4D9BEG5_SALSN; Uncharacterized protein
STRING	Migut.D00942.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11881	20	23