PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100238850152

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 342aa MW: 37002.6 Da PI: 5.4402

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100238850152	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.9	1e-09	191	235	5	54
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L++l+P+ + K + a++L + v+Y+k L Ote100238850152\|100238850152 191 HSIAERLRRERIAERIRALQDLVPSvN------KTDRAAMLDEIVDYVKFL 235 99*********************55......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.53E-15	184	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.145	186	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.0E-15	188	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.0E-7	191	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.3E-11	192	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MASNNPGDAP SDDFFEQILG FQGYATGADA NLVGNEAPAA AAMXXXXXXX XXXXXXXXXX 60 XXXXXXLGGP MGAGXXXXXX XXXXXXXFPL GLSLEQGKAG FLDASGSGRR FLRDDIFDLR 120 GASAVKPGSI VHADSGGNDG IKNNAVGVNN VISRVSWSTN VKYSSXXXXX XXXXAVRPRV 180 RARRGQATDP HSIAERLRRE RIAERIRALQ DLVPSVNKTD RAAMLDEIVD YVKFLRLQVK 240 VLSMSRLGGA GAVAPLVTDI PISSVEEDGS DDGRTQPAWE KWSNDGTERQ VAKLMEENVG 300 AAMQFLQSKA LCLMPISLAS AIYHAQPPDT IQLVKPESDP PL

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MASNNPGDAP SDDFFEQILG FQGYATGADA NLVGNEAPAA AAMXXXXXXX XXXXXXXXXX  60
XXXXXXLGGP MGAGXXXXXX XXXXXXXFPL GLSLEQGKAG FLDASGSGRR FLRDDIFDLR  120
GASAVKPGSI VHADSGGNDG IKNNAVGVNN VISRVSWSTN VKYSSXXXXX XXXXAVRPRV  180
RARRGQATDP HSIAERLRRE RIAERIRALQ DLVPSVNKTD RAAMLDEIVD YVKFLRLQVK  240
VLSMSRLGGA GAVAPLVTDI PISSVEEDGS DDGRTQPAWE KWSNDGTERQ VAKLMEENVG  300
AAMQFLQSKA LCLMPISLAS AIYHAQPPDT IQLVKPESDP PL

Functional Description ? help Back to Top
Source	Description
UniProt	Required for ovule fertilization. {ECO:0000269\|PubMed:15634699}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012831677.1	1e-129	PREDICTED: transcription factor UNE12
Swissprot	O22768	7e-98	UNE12_ARATH; Transcription factor UNE12
TrEMBL	A0A022S2E7	1e-128	A0A022S2E7_ERYGU; Uncharacterized protein
STRING	Migut.D00370.1.p	1e-128	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5799	24	34

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]