PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100238290011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MYB_related | ||||||||
Protein Properties | Length: 269aa MW: 29541.2 Da PI: 7.6713 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 63.4 | 4.6e-20 | 14 | 59 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd+ll ++v+++G+++W++I++ ++ gR++k+c++rw + Ote100238290011|100238290011 14 KGPWSPEEDDLLQKLVEKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 59 79******************************.***********985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.334 | 9 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.95E-21 | 11 | 86 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-18 | 13 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 13 | 59 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.5E-20 | 14 | 59 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.74E-17 | 16 | 58 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.0E-6 | 60 | 85 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MAATAQQSEA DRTKGPWSPE EDDLLQKLVE KHGPRNWSLI SKSIPGRSGK SCRLRWCNQL 60 SPQVEHRAFT PEEDETIIRA HARFARQPLK RSASVGPGTN ISASAFCFNP GSPDGSDMSE 120 SSHSGHLVYR PIARTGGISP PERQLDPVTS LSLSLPGFDP NPGHSTGLDL DPQIVTEPSI 180 SMLPKHSVQP LASHPPSPPQ SSVQNHQFGQ PTAEKQFFSE EFLRVMQEMV RKEVHNYMAG 240 VQPNGFSACM QSEAIRNAMV KRMGISKID |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 1e-20 | 14 | 109 | 4 | 98 | C-Myb DNA-Binding Domain |
1msf_C | 1e-20 | 14 | 109 | 4 | 98 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012851720.1 | 1e-115 | PREDICTED: transcription factor MYB44-like | ||||
TrEMBL | A0A059PRP0 | 1e-136 | A0A059PRP0_SALMI; MYB-related transcription factor | ||||
STRING | Migut.C00524.1.p | 1e-115 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1586 | 24 | 71 |