PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100237790041

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 168aa MW: 18855.2 Da PI: 9.0934

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100237790041	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.8	1.5e-11	90	130	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L++l+P+ +K++ +++Le+Av+Y+k Lq Ote100237790041\|100237790041 90 RKRRERINERLKILQTLVPNG-----TKVDISTMLEEAVQYVKFLQ 130 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.383	80	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.98E-15	80	147	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.6E-13	85	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.9E-12	86	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.92E-11	89	134	No hit	No description
Pfam	PF00010	5.1E-9	90	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MMDDDKKRPQ LLEESSQRSK KLKKCVKVDE NEDDVSNNTA TNTTNVVGLH RQSSSGFCSE 60 DDSNGGQSSS SSKRRASRGS ATDPQSLYAR KRRERINERL KILQTLVPNG TKVDISTMLE 120 EAVQYVKFLQ LQIKLLSSDD MWMYAPIAYN GMDIGLDFKI PSPKSQSS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012836777.1	8e-65	PREDICTED: transcription factor bHLH54-like
Swissprot	Q7XHI9	9e-57	BH084_ARATH; Transcription factor bHLH84
TrEMBL	A0A0H3Y7L5	8e-73	A0A0H3Y7L5_SALMI; Basic helix-loop-helix transcription factor
STRING	XP_004159936.1	2e-61	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA639	22	101