PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100237660061
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family Trihelix
Protein Properties Length: 364aa    MW: 41444.8 Da    PI: 6.7975
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100237660061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix67.72.3e-2130109171
                      trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                                   rWt+qe+l Li+++r  eer r+g+         + +++W+ vs+++r+ g++r+p+qC+++w+nl  ++kkik++++++
  Ote100237660061|100237660061  30 RWTRQETLILIQGKRLAEERGRNGRrsssvfgsdQVEAKWDYVSSHCRRNGVNRGPIQCRKRWSNLLSDFKKIKTWDSRG 109
                                   8**************9999999875556777777*******************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-522101IPR009057Homeodomain-like
PROSITE profilePS500907.1552396IPR017877Myb-like domain
PfamPF138374.3E-1229113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MAQGSNGMSG NTSPSVERTN DKNKTPRHPR WTRQETLILI QGKRLAEERG RNGRRSSSVF  60
GSDQVEAKWD YVSSHCRRNG VNRGPIQCRK RWSNLLSDFK KIKTWDSRGG ESFWMMRSEV  120
RRERKLPGFF DQEVYDVLDG KELNGDEYKL ALVKVSAYDN NGDGLDGLEP EIEDEMVEDE  180
EAGEGLFLEF ENVGEEEVVM SPGNGIDTNG KTKTIPSPVP ISEMKYQPFH QANTNQGKKR  240
QLNPQNGRDS EFHGGVKKRK QPSSDPQKID IENLLIKALE RNNDLLSAQI EDQKLNFQLA  300
REQQKDQHDR LNAALTKITA AXXXXXXXXX XXXXXXXXXX XXXSVMANLS CLSIIFGSHF  360
CYSY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083005.11e-129trihelix transcription factor ASR3-like
TrEMBLA0A4D9AB951e-122A0A4D9AB95_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17862460