PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100237480041 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MYB | ||||||||
Protein Properties | Length: 253aa MW: 29762.5 Da PI: 5.2128 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51 | 3.3e-16 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +lv +vk++G ++W+ Ia+ g++R++k+c++rw +yl Ote100237480041|100237480041 8 KGPWTEQEDVQLVFYVKLFGDRRWDFIAKVSGLNRSGKSCRLRWVNYL 55 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.7 | 1.9e-16 | 61 | 105 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T+ E+ l+v++ ++G++ W++Iar+++ gRt++++k++w+++ Ote100237480041|100237480041 61 RDKMTPHEERLIVELQSKWGNR-WSRIARKLP-GRTDNEIKNYWRTH 105 7899******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.079 | 3 | 59 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.56E-29 | 6 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-14 | 7 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.5E-15 | 8 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-20 | 9 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.55E-9 | 10 | 55 | No hit | No description |
SMART | SM00717 | 1.3E-14 | 60 | 108 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.775 | 60 | 110 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.3E-13 | 61 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-20 | 63 | 106 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.59E-11 | 63 | 105 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MEREEVRKGP WTEQEDVQLV FYVKLFGDRR WDFIAKVSGL NRSGKSCRLR WVNYLHPGLK 60 RDKMTPHEER LIVELQSKWG NRWSRIARKL PGRTDNEIKN YWRTHXXXXX XXXXXXXXXX 120 XXXXXXXXXX XXXXXXXXXV EEERSFYDTG GVDDSTANAT TNGEKKSGLG LEVEEGSKVY 180 SMDDIWKEFE FPEGLTSPTV VSPTWDDCCT TDSLWCMNIE EESKMLXXXX XXXXXXISDH 240 HFQTFPFCNY MIG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 8e-25 | 5 | 104 | 24 | 122 | MYB TRANSFORMING PROTEIN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020552227.1 | 2e-84 | transcription factor MYB48 isoform X3 | ||||
Swissprot | Q9LX82 | 7e-65 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A059PRS8 | 3e-94 | A0A059PRS8_SALMI; MYB-related transcription factor | ||||
STRING | XP_009358321.1 | 6e-72 | (Pyrus x bretschneideri) | ||||
STRING | XP_002531120.1 | 5e-72 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Publications ? help Back to Top | |||
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