PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100237410021
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ERF
Protein Properties Length: 107aa    MW: 11906.3 Da    PI: 11.0548
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100237410021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.78.1e-203886355
                           AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                  + GVr+++ +gr++AeIrdp++   + r++lg+f+taeeAa a+++a+++++g
  Ote100237410021|100237410021 38 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAEEAALAYDRAARSMRG 86
                                  67******.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.3E-265106IPR017392AP2/ERF transcription factor ERF/PTI6
SuperFamilySSF541715.95E-223795IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.1E-303794IPR001471AP2/ERF domain
CDDcd000188.99E-283793No hitNo description
SMARTSM003804.2E-3437100IPR001471AP2/ERF domain
PROSITE profilePS5103220.7453794IPR001471AP2/ERF domain
PRINTSPR003679.1E-93849IPR001471AP2/ERF domain
PfamPF008479.0E-134086IPR001471AP2/ERF domain
PRINTSPR003679.1E-96076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MDSMNKSSCK ASPSKAKRKG SQQPPPPQSP NDSSTNRFLG VRRRPWGRYA AEIRDPTTKE  60
RHWLGTFDTA EEAALAYDRA ARSMRGSRAR TNFVYSDMPP GSSVTSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-203893662ATERF1
3gcc_A1e-203893662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCell division-promoting factor involved in leaf blade differentiation, inflorescence branching, as well as in carpel and silique shape. Promotes the number of xylem cells. Regulates positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11044410, ECO:0000269|PubMed:12472696, ECO:0000269|PubMed:16339853}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By imbibition. {ECO:0000269|PubMed:16339853}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020551701.12e-47uncharacterized protein LOC105168692
RefseqXP_022858401.18e-49ethylene-responsive transcription factor LEP-like
SwissprotQ9M6442e-45LEP_ARATH; Ethylene-responsive transcription factor LEP
TrEMBLA0A4D9B6M96e-51A0A4D9B6M9_SALSN; EREBP-like factor
STRINGcassava4.1_025891m2e-45(Manihot esculenta)
STRINGMigut.K01126.1.p2e-45(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53831934
Publications ? help Back to Top
  1. van der Graaff E,Nussbaumer C,Keller B
    The Arabidopsis thaliana rlp mutations revert the ectopic leaf blade formation conferred by activation tagging of the LEP gene.
    Mol. Genet. Genomics, 2003. 270(3): p. 243-52
    [PMID:12910411]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Chandler JW
    Class VIIIb APETALA2 Ethylene Response Factors in Plant Development.
    Trends Plant Sci., 2018. 23(2): p. 151-162
    [PMID:29074232]