PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100237400011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | NAC | ||||||||
Protein Properties | Length: 330aa MW: 37477.7 Da PI: 6.1164 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.2 | 1.5e-53 | 22 | 149 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhPtdeel+++yL+ kv + ++ +i+evd++++ePw+Lp +k +ekewyfFs rd+ky+tg r+nrat +g Ote100237400011|100237400011 22 LPPGFRFHPTDEELITFYLASKVFNGSFCG-VHIAEVDLNRCEPWELPDVAKMGEKEWYFFSLRDRKYPTGLRTNRATGAG 101 79*************************877.56***************8888899************************** PP NAM 82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 yWkatgkd+evls+ +g+l g+kktLvfykgrap+gekt+Wvmheyrl Ote100237400011|100237400011 102 YWKATGKDREVLSAsTGTLLGMKKTLVFYKGRAPRGEKTKWVMHEYRL 149 ************9878889***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-63 | 18 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.963 | 22 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.0E-28 | 23 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MMGMEEILCE LERDDDVGEQ GLPPGFRFHP TDEELITFYL ASKVFNGSFC GVHIAEVDLN 60 RCEPWELPDV AKMGEKEWYF FSLRDRKYPT GLRTNRATGA GYWKATGKDR EVLSASTGTL 120 LGMKKTLVFY KGRAPRGEKT KWVMHEYRLD GDFSCRHTGK EEWVICRIFH KMGEKKSLLR 180 GQNYLFKASS FYNPTFTTNS LPPLLEDQTP LFQNPLLIHT QESDFKTLIS PLVSQPGLLM 240 SNHELGFKEL SNAIAKQCKK ESEFPCNFQL VSEGPVEMRV EESSSSSKYL ENPFIFGGNM 300 GVIPSATVGD HSVTAAMDVM STEPAFRWWS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-52 | 11 | 171 | 9 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-52 | 11 | 171 | 9 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-52 | 11 | 171 | 9 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-52 | 11 | 171 | 9 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-52 | 11 | 171 | 9 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-52 | 11 | 171 | 9 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-52 | 11 | 171 | 9 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-52 | 11 | 171 | 9 | 168 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00241 | DAP | Transfer from AT1G76420 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011074066.1 | 1e-152 | protein CUP-SHAPED COTYLEDON 3 | ||||
Swissprot | Q9S851 | 4e-98 | NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3 | ||||
TrEMBL | A0A2G9GXG5 | 1e-138 | A0A2G9GXG5_9LAMI; Uncharacterized protein | ||||
STRING | POPTR_0002s00730.1 | 1e-127 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |
Publications ? help Back to Top | |||
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