PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100236740011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 126aa MW: 13533.8 Da PI: 10.0758 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66.5 | 2.6e-21 | 17 | 65 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ie ks qvtfskRr g++ KA+ELS+LC+a++a+++ s+ +k+y + Ote100236740011|100236740011 17 KKIEKKSTLQVTFSKRRGGLFRKASELSILCGAQIAILVQSPADKMYAF 65 68*********************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.1E-29 | 9 | 68 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.133 | 9 | 69 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.27E-25 | 10 | 82 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-19 | 11 | 31 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-22 | 18 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-19 | 31 | 46 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-19 | 46 | 67 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009553 | Biological Process | embryo sac development | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
METSKKKTLG RRKIEIKKIE KKSTLQVTFS KRRGGLFRKA SELSILCGAQ IAILVQSPAD 60 KMYAFGHPSV GALIDNSPAI TPQGGNDGRM KYEKAAXXXX XXXXXXXGEE IDGGEGGEGF 120 LVGGGD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that controls female gametophyte (megagametogenesis) development and chloroplast biogenesis during embryo development. {ECO:0000269|PubMed:18346189}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012853655.1 | 7e-31 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
Swissprot | O80807 | 4e-26 | AGL23_ARATH; Agamous-like MADS-box protein AGL23 | ||||
TrEMBL | A0A4D8XV38 | 8e-35 | A0A4D8XV38_SALSN; Uncharacterized protein | ||||
STRING | Migut.H00739.1.p | 6e-35 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13821 | 4 | 15 |
Publications ? help Back to Top | |||
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