PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100236590001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 195aa MW: 22709.6 Da PI: 9.4402 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 74.9 | 1.1e-23 | 1 | 43 | 17 | 60 |
ZF-HD_dimer 17 lGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 +Ggh+vDGCgEfmps g++gt++al+CaAC+CHRnFHRre e + Ote100236590001|100236590001 1 MGGHVVDGCGEFMPS-GDDGTPQALRCAACDCHRNFHRREIEGQ 43 7*************9.999*********************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01566 | 4.4E-22 | 1 | 40 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-15 | 1 | 43 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.4E-21 | 1 | 40 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 19.388 | 1 | 39 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 4.35E-18 | 120 | 189 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-27 | 121 | 189 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 8.633 | 126 | 190 | IPR001356 | Homeobox domain |
TIGRFAMs | TIGR01565 | 9.0E-28 | 128 | 185 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MGGHVVDGCG EFMPSGDDGT PQALRCAACD CHRNFHRREI EGQQHPFHSY AFXXXXXXXX 60 XXXXXXXXXX XXXXNRQTPA HHRGFAAPPT MVSXXXXXXX XXXXXXXDLN IFQSSDAAXX 120 XXXXXXSKKR FRTKFRQDQK ERMHEFATKL GWRLQKQDEQ EVQEFCSEIG VKRQSFKIWM 180 HNNKQAIKKR SSSEV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-20 | 127 | 186 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099626.1 | 1e-66 | zinc-finger homeodomain protein 6 | ||||
TrEMBL | A0A022RJ01 | 1e-57 | A0A022RJ01_ERYGU; Uncharacterized protein | ||||
STRING | Migut.H00983.1.p | 2e-58 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA518 | 24 | 128 |