PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100236290081 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | C2H2 | ||||||||
Protein Properties | Length: 173aa MW: 18522.4 Da PI: 8.6733 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16 | 3.3e-05 | 146 | 169 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ C+k+F + L++H + H Ote100236290081|100236290081 146 YSCKSCSKTFGSEKALESHSKAkH 169 99*****************98777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.0083 | 146 | 169 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.549 | 146 | 173 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 9.4E-6 | 146 | 170 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 148 | 169 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MEPSTFTDTG LVTHESESDE ELPLMTANNA KPEPKEKSAK PAETAKANAA KGKESDAGKQ 60 KDEDDSDEES GESDEETPKK VEPSKKRVAE SASKTPVQDK KAKVTPQKTD GKKVSGHVAT 120 PYPAKQVGKT PANKPNQQIH QLGGSYSCKS CSKTFGSEKA LESHSKAKHS SKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By fertilization. {ECO:0000269|PubMed:15082924}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011101488.1 | 4e-55 | histone deacetylase HDT1 | ||||
Swissprot | Q6V9I6 | 6e-33 | HDT1_SOLCH; Histone deacetylase HDT1 | ||||
TrEMBL | A0A4D8YXN0 | 2e-62 | A0A4D8YXN0_SALSN; Uncharacterized protein | ||||
STRING | Migut.J00993.1.p | 3e-42 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3176 | 18 | 23 |
Publications ? help Back to Top | |||
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