PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100235820111

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

MYB_related

Protein Properties

Length: 279aa MW: 31875.6 Da PI: 5.2881

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100235820111	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.9	6.5e-15	2	42	4	46
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++eE++l++++++ lG++ W+ Ia+ ++ gRt++++k++w++ Ote100235820111\|100235820111 2 FSQEEEDLILNLHQALGNR-WAQIAAQLP-GRTDNEIKNFWNS 42 89***************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	21.711	1	48	IPR017930	Myb domain
Pfam	PF00249	1.3E-13	2	42	IPR001005	SANT/Myb domain
SMART	SM00717	1.8E-10	2	46	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.18E-13	2	54	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.9E-21	2	45	IPR009057	Homeodomain-like
CDD	cd00167	2.25E-11	2	44	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MFSQEEEDLI LNLHQALGNR WAQIAAQLPG RTDNEIKNFW NSSLKKKLLK QGVDPNTHKP 60 INEAQVKDES PDLQSLQQQG LPTYHLCNNG GKMAAARHNF SDKQVYDPLF LSEFQANVDP 120 EGFQSSFLSH CQQTLLRPFE QSQSXXXXXX XXXPICGFNS MXXXXXXXXX XFDHQNMPQT 180 QYPHHLSSRM NKFVMNGAKE SSSLSLQQAM MQMNNNSSNV VENGGASSWE EEGKLDSVFQ 240 FQFSGIQIDE RDQKLQNQTS DDFTAYSSTQ NMNVFDHRM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071911.1	3e-91	transcription factor MYB86
TrEMBL	A0A059PRU5	3e-73	A0A059PRU5_SALMI; MYB-related transcription factor
STRING	VIT_17s0000g09080.t01	1e-62	(Vitis vinifera)