PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100235820041

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

LBD

Protein Properties

Length: 175aa MW: 19548.8 Da PI: 9.1604

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100235820041	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	109.2	3.1e-34	10	84	1	75
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyG 75 +CaaCk+lrrkC ++C+++ yfp e+p+kfanvhk+FGasnv kll++l +++r+da++sl+yeAear+rdPvy Ote100235820041\|100235820041 10 PCAACKFLRRKCMPGCIFSAYFPPEEPQKFANVHKIFGASNVAKLLNELLPHQRDDAVNSLAYEAEARVRDPVYX 84 7************************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.403	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.1E-33	10	84	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MASSSTYNPP CAACKFLRRK CMPGCIFSAY FPPEEPQKFA NVHKIFGASN VAKLLNELLP 60 HQRDDAVNSL AYEAEARVRD PVYXXXXXXX XXXXXXXXXX XXXXXRCSEC RLDPLRLQRY 120 AGAAAAGAGG GGIHARGASA AAGEIRELQR RKRWGRRWEI LSNNWCANFV SCSLE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-44	10	83	11	84	LOB family transfactor Ramosa2.1
5ly0_B	5e-44	10	83	11	84	LOB family transfactor Ramosa2.1