PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100235110081

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

BBR-BPC

Protein Properties

Length: 287aa MW: 32695.1 Da PI: 9.7066

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100235110081	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	289.4	1.6e-88	1	287	1	301
GAGA_bind 1 mdddgsre.rnkg.yye............pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdka 66 md+ g ++ r + yy+ ++ ++++ ++ +l+ + erda+irer+ al+ekk+a+ erd a +q ++a Ote100235110081\|100235110081 1 MDEGGRENrRPRMdYYKapqwntmpqyqiKEpNTFQ--MNAKLIMLCDERDAAIRERDRALAEKKSALDERDTAMKQLEAA 79 899999886656679999999999887773346777..999************************************** PP GAGA_bind 67 laernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakek 147 + er++al erdn+++al ++en++++ l sg + + ++q +l+++++ + e+k++ Ote100235110081\|100235110081 80 VMERDEALRERDNAIAALHFHENTMNTLL------TSGPRGSKRTNQ----NLREECMS-------DPD-------EVKKR 136 ******************9866544......333344333333....45555554.......333.......33344 PP GAGA_bind 148 kkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGn 227 +k+k+++ + ++ kk+kk +e+ +++v++++ skae++ +d+ ++n++ +Des++PvPvCsCtG++rqCYkWGn Ote100235110081\|100235110081 137 SKTKSNKGVPTRSTRSPKKVKKIGEDLNRQVTTDG----SKAEWDAQDIgSMNQIIFDESSMPVPVCSCTGVPRQCYKWGN 213 44444444444555556677888888888888888....89****88************************** PP GAGA_bind 228 GGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 GGWqS+CCtt++S+yPLP+++++r+aR++grKmS+++f++lL +Laa +dls pvDLkdhWAkHGtn+++ti+ Ote100235110081\|100235110081 214 GGWQSSCCTTSLSIYPLPQMPNKRHARMGGRKMSGSVFSRLLTRLAASDHDLSIPVDLKDHWAKHGTNRYITIK 287 ***********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	7.4E-109	1	287	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	1.5E-88	1	287	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MDEGGRENRR PRMDYYKAPQ WNTMPQYQIK EPNTFQMNAK LIMLCDERDA AIRERDRALA 60 EKKSALDERD TAMKQLEAAV MERDEALRER DNAIAALHFH ENTMNTLLTS GPRGSKRTNQ 120 NLREECMSDP DEVKKRSKTK SNKGVPTRST RSPKKVKKIG EDLNRQVTTD GSKAEWDAQD 180 IGSMNQIIFD ESSMPVPVCS CTGVPRQCYK WGNGGWQSSC CTTSLSIYPL PQMPNKRHAR 240 MGGRKMSGSV FSRLLTRLAA SDHDLSIPVD LKDHWAKHGT NRYITIK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011088547.1	1e-150	protein BASIC PENTACYSTEINE4 isoform X1
Refseq	XP_011088549.1	1e-150	protein BASIC PENTACYSTEINE4 isoform X1
Refseq	XP_011088550.1	1e-150	protein BASIC PENTACYSTEINE4 isoform X1
Refseq	XP_011088551.1	1e-150	protein BASIC PENTACYSTEINE4 isoform X1
Swissprot	Q8S8C6	1e-106	BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBL	A0A4D8YJH3	1e-173	A0A4D8YJH3_SALSN; Uncharacterized protein
TrEMBL	A0A4D9A1R0	1e-170	A0A4D9A1R0_SALSN; Uncharacterized protein
STRING	XP_009804621.1	1e-132	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9287	21	28