PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100234450091 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | TALE | ||||||||
Protein Properties | Length: 270aa MW: 30818 Da PI: 5.2211 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 14.8 | 5.1e-05 | 213 | 240 | 28 | 55 |
HHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 28 eereeLAkklgLterqVkvWFqNrRake 55 +e+ L++ ++L+++q+ +WF N+R ++ Ote100234450091|100234450091 213 DEKNMLSEMTRLDQKQINNWFINQRKRH 240 67889********************885 PP | |||||||
2 | ELK | 28.1 | 4.8e-10 | 186 | 207 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 +LK++L+rKY+gy +L++ ++ Ote100234450091|100234450091 186 DLKEMLMRKYRGYVTNLRKDLL 207 6*****************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 7.3E-21 | 48 | 92 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.6E-21 | 50 | 91 | IPR005540 | KNOX1 |
SMART | SM01256 | 3.2E-21 | 93 | 144 | IPR005541 | KNOX2 |
Pfam | PF03791 | 2.1E-21 | 96 | 143 | IPR005541 | KNOX2 |
SMART | SM01188 | 1300 | 102 | 122 | IPR005539 | ELK domain |
Pfam | PF03789 | 1.1E-6 | 186 | 207 | IPR005539 | ELK domain |
SMART | SM01188 | 6.6E-4 | 186 | 207 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.533 | 186 | 206 | IPR005539 | ELK domain |
SMART | SM00389 | 0.0045 | 192 | 247 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.8E-8 | 211 | 253 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-12 | 212 | 245 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 7.9E-9 | 212 | 239 | IPR008422 | Homeobox KN domain |
CDD | cd00086 | 2.26E-7 | 212 | 244 | No hit | No description |
PROSITE profile | PS50071 | 9.118 | 212 | 243 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 218 | 241 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MDDLHKFHCF DDGISSCSYH PDMAAXXXXX XXXXXXHDHQ QGLMEISNVI KAQIANHPLY 60 PTLLSAYIDC RKVGAPPEMA SILEEIGKEN HTISSEIGTD PELDHFMKSY CDTLHKYKEE 120 LSKPFVEATN FLSSIGSQLT DLCKQTLPPN EGPSIPRLVG NEPPRSGSDD GEVVEDSGSM 180 EWGDQDLKEM LMRKYRGYVT NLRKDLLKKR RKDEKNMLSE MTRLDQKQIN NWFINQRKRH 240 WRPSEDMRFA LLEGVGATAD AAIYFDETSA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011087493.1 | 6e-91 | homeobox protein knotted-1-like 1 | ||||
Swissprot | Q9FP29 | 7e-64 | KNOS1_ORYSJ; Homeobox protein knotted-1-like 1 | ||||
TrEMBL | A0A2G9GXR3 | 1e-88 | A0A2G9GXR3_9LAMI; Transcription factor MEIS1 | ||||
STRING | Gorai.007G306500.1 | 2e-81 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA753 | 24 | 80 |
Publications ? help Back to Top | |||
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