PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100234450091
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family TALE
Protein Properties Length: 270aa    MW: 30818 Da    PI: 5.2211
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100234450091genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox14.85.1e-052132402855
                                   HHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                      Homeobox  28 eereeLAkklgLterqVkvWFqNrRake 55 
                                   +e+  L++ ++L+++q+ +WF N+R ++
  Ote100234450091|100234450091 213 DEKNMLSEMTRLDQKQINNWFINQRKRH 240
                                   67889********************885 PP

2ELK28.14.8e-10186207122
                           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                   +LK++L+rKY+gy  +L++ ++
  Ote100234450091|100234450091 186 DLKEMLMRKYRGYVTNLRKDLL 207
                                   6*****************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012557.3E-214892IPR005540KNOX1
PfamPF037901.6E-215091IPR005540KNOX1
SMARTSM012563.2E-2193144IPR005541KNOX2
PfamPF037912.1E-2196143IPR005541KNOX2
SMARTSM011881300102122IPR005539ELK domain
PfamPF037891.1E-6186207IPR005539ELK domain
SMARTSM011886.6E-4186207IPR005539ELK domain
PROSITE profilePS512139.533186206IPR005539ELK domain
SMARTSM003890.0045192247IPR001356Homeobox domain
SuperFamilySSF466891.8E-8211253IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-12212245IPR009057Homeodomain-like
PfamPF059207.9E-9212239IPR008422Homeobox KN domain
CDDcd000862.26E-7212244No hitNo description
PROSITE profilePS500719.118212243IPR001356Homeobox domain
PROSITE patternPS000270218241IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MDDLHKFHCF DDGISSCSYH PDMAAXXXXX XXXXXXHDHQ QGLMEISNVI KAQIANHPLY  60
PTLLSAYIDC RKVGAPPEMA SILEEIGKEN HTISSEIGTD PELDHFMKSY CDTLHKYKEE  120
LSKPFVEATN FLSSIGSQLT DLCKQTLPPN EGPSIPRLVG NEPPRSGSDD GEVVEDSGSM  180
EWGDQDLKEM LMRKYRGYVT NLRKDLLKKR RKDEKNMLSE MTRLDQKQIN NWFINQRKRH  240
WRPSEDMRFA LLEGVGATAD AAIYFDETSA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087493.16e-91homeobox protein knotted-1-like 1
SwissprotQ9FP297e-64KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A2G9GXR31e-88A0A2G9GXR3_9LAMI; Transcription factor MEIS1
STRINGGorai.007G306500.12e-81(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7532480
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]