PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100234360041 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | TALE | ||||||||
Protein Properties | Length: 190aa MW: 22275.2 Da PI: 8.2484 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 25.1 | 2.9e-08 | 135 | 168 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + Ote100234360041|100234360041 135 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 168 469*****************************87 PP | |||||||
2 | ELK | 29.4 | 1.8e-10 | 89 | 110 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++L+++++E++ Ote100234360041|100234360041 89 ELKHELKNGYKEKLVDIREEIL 110 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01256 | 6.7E-11 | 3 | 43 | IPR005541 | KNOX2 |
Pfam | PF03791 | 2.4E-10 | 4 | 42 | IPR005541 | KNOX2 |
Pfam | PF03789 | 1.6E-6 | 89 | 110 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.865 | 89 | 109 | IPR005539 | ELK domain |
SMART | SM01188 | 0.001 | 89 | 110 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.564 | 109 | 172 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.03E-16 | 111 | 177 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.7E-10 | 111 | 176 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.53E-10 | 112 | 173 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-24 | 116 | 174 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.1E-18 | 129 | 168 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MQTNYVLLLC SFKEKLQQHV RIHAMEAVMG CWEIEQSLQS LTGVSPGEGT GATMSDDEDE 60 QEDSMMDMGL GPLIPTDSER SLMERVRQEL KHELKNGYKE KLVDIREEIL RKRRAGKLPG 120 DTTYVLKEWW HSHSKWPYPT EEDKARLVQE TGLQLKQINN WFINQRKRNW HAHANTNPSS 180 SQSKRKRRDR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006345637.1 | 1e-111 | PREDICTED: homeobox protein knotted-1-like 3 | ||||
Refseq | XP_010519640.1 | 1e-111 | PREDICTED: homeobox protein knotted-1-like 3 | ||||
Swissprot | P48000 | 1e-109 | KNAT3_ARATH; Homeobox protein knotted-1-like 3 | ||||
Swissprot | P48001 | 1e-110 | KNAT4_ARATH; Homeobox protein knotted-1-like 4 | ||||
TrEMBL | A0A0V0ID04 | 1e-110 | A0A0V0ID04_SOLCH; Putative homeobox protein knotted-1-like 3-like | ||||
TrEMBL | A0A444YV65 | 1e-109 | A0A444YV65_ARAHY; Uncharacterized protein | ||||
TrEMBL | A0A444YV93 | 1e-109 | A0A444YV93_ARAHY; Uncharacterized protein | ||||
TrEMBL | M1B9S2 | 1e-110 | M1B9S2_SOLTU; Uncharacterized protein | ||||
TrEMBL | M1B9S3 | 1e-110 | M1B9S3_SOLTU; Uncharacterized protein | ||||
STRING | XP_010519640.1 | 1e-111 | (Tarenaya hassleriana) | ||||
STRING | PGSC0003DMT400040351 | 1e-110 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1432 | 24 | 72 |
Publications ? help Back to Top | |||
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