PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100233850021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ARR-B
Protein Properties Length: 605aa    MW: 67331.1 Da    PI: 6.7753
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100233850021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like79.54.1e-25138187151
                       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                                   kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQ
  Ote100233850021|100233850021 138 KPRVVWSVELHQQFVTAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQ 187
                                   79*******************.***************************** PP
2Response_reg32.54.4e-1215653109
                                   CTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
                  Response_reg  53 mpgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                                   mp+mdG++ll+     e++lp+i+++a g  +++l+ ++ Ga d+l Kp+  eel +
  Ote100233850021|100233850021   1 MPDMDGFKLLELVGL-EMDLPVIMMSADGRAKMVLRGVRHGACDYLIKPIRDEELKN 56 
                                   9*********87754.558***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000729.5E-9156IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.99E-13161No hitNo description
PROSITE profilePS5011024.353162IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23001.6E-20181No hitNo description
SuperFamilySSF521725.27E-16171IPR011006CheY-like superfamily
PROSITE profilePS5129410.792135194IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-25135187IPR009057Homeodomain-like
SuperFamilySSF466898.06E-16136187IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-21138187IPR006447Myb domain, plants
PfamPF002495.4E-6140187IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MPDMDGFKLL ELVGLEMDLP VIMMSADGRA KMVLRGVRHG ACDYLIKPIR DEELKNIWQH  60
VVRKRQNEMK EHDHTSSMED HDHSKRVMDD AEYASSANXX XXXXXXXXEV LRAQKKRRDS  120
KDEDVAEMEN DDSTSSKKPR VVWSVELHQQ FVTAVNQLGI DKAVPKRILE LMNVPGLTRE  180
NVASHLQSSM VSESMYLVMV AIAKITCIDC IFPHEMFLWK FRLYLKRLSG VAQQQVGXXX  240
XXXXXAPYCG PVEQNLKLAS LGRIDFQALV ASGQLPPQXX XXXXXXXXXX XXXXLILPGM  300
DQRTLLHASL QGSKWIPVDQ VAYGQPLMKC SPNIAKQNPQ PLMSNNDACP EFAGWSSKNL  360
GDVVPACNPG GTVAETNSNV LLNFVQQQKP QQKQSMMLEP SRSVNVQPSC LVVPSQSSPN  420
HQAGNSPVSV NQNCSFRNSS VDYNNPSLNN SSGIGQILDV ECKPVRVPSE FGAAASVSST  480
SSCSRNIQDS ACQRVRSSPS TINAFMQLPN MNFVQSSYSG TSSNLVQGSI RNTICIGKGT  540
SIPSRFAIDE QELQMRNLSQ EKPYVENNDN KVKLEPSMDL MENVKLGIPL QQHFSQNDLM  600
SVLSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-18134192159ARR10-B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070559.10.0two-component response regulator ORR21
TrEMBLA0A4D9BQA80.0A0A4D9BQA8_SALSN; Two-component response regulator ARR-B family
STRINGVIT_01s0011g05830.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77492130