PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100233750021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | WRKY | ||||||||
Protein Properties | Length: 161aa MW: 17575 Da PI: 10.0276 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102 | 3.6e-32 | 90 | 147 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp+++++tYegeHnh Ote100233750021|100233750021 90 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPTMLIVTYEGEHNHA 147 99************************988****************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 3.4E-17 | 41 | 86 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 3.3E-34 | 76 | 147 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.054 | 83 | 149 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.5E-28 | 85 | 148 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.5E-38 | 88 | 148 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.4E-28 | 90 | 146 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MSSLTGDTDS LQPSMSSGFQ ITNLSQVSSA GRPPLSTSSF KRKCSSMDDG NAKCGSGSSR 60 CHCPKKRKSR LKRVVRVPAI SMKMADIPPD DYSWRKYGQK PIKGSPHPRG YYKCSSVRGC 120 PARKHVERAL DDPTMLIVTY EGEHNHAISN SEAPALVLES S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-22 | 76 | 148 | 2 | 73 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00450 | DAP | Transfer from AT4G24240 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011074403.1 | 1e-111 | probable WRKY transcription factor 7 | ||||
Swissprot | Q9STX0 | 6e-69 | WRKY7_ARATH; Probable WRKY transcription factor 7 | ||||
TrEMBL | A0A0D5YA02 | 1e-108 | A0A0D5YA02_SALMI; WRKY protein | ||||
STRING | Migut.N02732.1.p | 1e-103 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1220 | 24 | 79 |