PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100231630071 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MYB | ||||||||
Protein Properties | Length: 292aa MW: 33727.6 Da PI: 10.06 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.6 | 1.2e-17 | 18 | 63 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l + v+++G+ +W++Ia++++ gR++k+c++rw++ Ote100231630071|100231630071 18 RGHWRPAEDEKLRQIVEKYGPQNWNSIAERLQ-GRSGKSCRLRWFNQ 63 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 57.8 | 2.4e-18 | 70 | 113 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l+ a++ +G++ W++I+r ++ gRt++ +k++w+ Ote100231630071|100231630071 70 RRPFSEEEEERLLAAHRIHGNK-WALISRLFP-GRTDNAVKNHWHV 113 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.376 | 13 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.8E-29 | 17 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-14 | 17 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-17 | 18 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-26 | 19 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.61E-13 | 21 | 62 | No hit | No description |
PROSITE profile | PS51294 | 27.388 | 65 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-15 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-15 | 70 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-21 | 72 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.32E-7 | 81 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MDETTCRGSG DDLRTCPRGH WRPAEDEKLR QIVEKYGPQN WNSIAERLQG RSGKSCRLRW 60 FNQLDPRINR RPFSEEEEER LLAAHRIHGN KWALISRLFP GRTDNAVKNH WHVIMARKQR 120 EKSKISGKIR ANQDHNADSK SPTNYVFRPK TNSRLQEEYG SKISFENGGI FDSQTQQHKD 180 KIFPLSSFSG WPNNLSSYSP KLYGRRNYKL PHLQTNFSIF SPYDDSFESR VSKTAIPNLF 240 SYSTCGALDR EWTSSGEGSF HFGKTRTNAE QDKSMEKKDV PFIDFLGVGI SS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-31 | 18 | 118 | 7 | 107 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011101908.1 | 1e-134 | transcription factor MYB27 | ||||
Refseq | XP_020554996.1 | 1e-134 | transcription factor MYB27 | ||||
TrEMBL | A0A4D8YWW6 | 1e-147 | A0A4D8YWW6_SALSN; Myb proto-oncogene protein, plant | ||||
STRING | Migut.C01099.1.p | 1e-106 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1784 | 24 | 66 |