PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100231600061
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family AP2
Protein Properties Length: 410aa    MW: 45693.4 Da    PI: 10.1537
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100231600061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.32.4e-10183252155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...............kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GV+ +k  grW+A+   +   +               ++ ++++lg f+t+ eAa+a+++a+ k +g
  Ote100231600061|100231600061 183 SKYRGVTLHK-CGRWEARMGQFLGKNwmllssssmkfrippIQlRYIYLGLFDTEVEAARAYDKAAIKCNG 252
                                   89********.7******88865544688888898876666559**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.48262148IPR001471AP2/ERF domain
SMARTSM003808.9E-562154IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-7115150IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.6E-8119148IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-12183261IPR016177DNA-binding domain
PfamPF008473.2E-7183252IPR001471AP2/ERF domain
CDDcd000185.23E-22183262No hitNo description
PROSITE profilePS5103215.053184260IPR001471AP2/ERF domain
SMARTSM003801.6E-27184266IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.4E-14184261IPR001471AP2/ERF domain
PRINTSPR003673.7E-6185196IPR001471AP2/ERF domain
PRINTSPR003673.7E-6242262IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MFDLNLSVDC SEKADRSEPQ HSPATSASSX XXXXXXXXXX XXXXXXXQQR RRALRTRRLS  60
RRRRHVKLRH RRRRRSRVGD AGAVSGEPTR GAEPGKADQR TGESTRPDLG CGTTAAAAGG  120
FDTAHAAARA YDRAALKFRG VDADINFNIS DYDEDMKQTV NLSKEEFVHI LRRQSTGFSR  180
GSSKYRGVTL HKCGRWEARM GQFLGKNWML LSSSSMKFRI PPIQLRYIYL GLFDTEVEAA  240
RAYDKAAIKC NGREAVTNFE LSSYDGETIS EPRSSNELDL NLGMSSPSPR DSGNSGLFQF  300
HPYNVQTASM FKLHVEGSPA TRSGNLPLKR PLSLPGLNPN YEERAAQERT GSASSHEENW  360
AWRMHDHLHA IPVTALAAAS SGFSSTASYP TALNLCFSSY PTNTSQYSHR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089852.11e-112ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotB8AXC32e-73AP21_ORYSI; APETALA2-like protein 1
TrEMBLF6KQN43e-95F6KQN4_SOLLC; AP2 transcription factor SlAP2d
STRINGPGSC0003DMT4000653137e-96(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116