PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100231490031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family NAC
Protein Properties Length: 159aa    MW: 18547.7 Da    PI: 9.9867
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100231490031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM122.63.4e-38151351128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 
                                   lp GfrFhPtdeel+ +yLk+k+ + +l++ +vi+e++ ++++PwdLp ++   +++ yfF+kr++ + ++  +n +t+ g
  Ote100231490031|100231490031  15 LPIGFRFHPTDEELLIHYLKRKILSLPLPA-SVIPEFEAFQLNPWDLPGEL---KEKKYFFCKRRRISMNKCSSNFSTDCG 91 
                                   699***************************.99***************554...4578*********************** PP

                           NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   yWk+tgkdk+++   + ++g+kk+++fy+gr+ k   t+W+m+ey+l
  Ote100231490031|100231490031  92 YWKSTGKDKQIMGGANYVIGIKKSFAFYQGRNLK---TQWIMQEYSL 135
                                   *************99999**********988866...********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-4112140IPR003441NAC domain
PROSITE profilePS5100540.39215150IPR003441NAC domain
PfamPF023651.6E-2416135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MERARTEDEK EGVKLPIGFR FHPTDEELLI HYLKRKILSL PLPASVIPEF EAFQLNPWDL  60
PGELKEKKYF FCKRRRISMN KCSSNFSTDC GYWKSTGKDK QIMGGANYVI GIKKSFAFYQ  120
GRNLKTQWIM QEYSLVGHLK TPFLTQVCES KGKKLIFLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-3051355140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012844037.12e-69PREDICTED: NAC domain-containing protein 68
SwissprotQ9FY938e-42NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A2G9G9067e-69A0A2G9G906_9LAMI; Uncharacterized protein
STRINGMigut.F00031.1.p9e-69(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132501318
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]