PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100231240071
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family AP2
Protein Properties Length: 252aa    MW: 28164.2 Da    PI: 4.9726
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100231240071genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.62.8e-12121178255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpse.ng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr+++ +g+W+AeIrdp++                f+ ae+Aa+a+++a+ +++g
  Ote100231240071|100231240071 121 KYRGVRRRP-WGKWAAEIRDPYKaXXxxxXXxXXXXXXXFDRAEDAARAYDEAAFRFRG 178
                                   8********.**********9997335763369999********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.6E-20120187IPR001471AP2/ERF domain
SMARTSM003801.4E-22121192IPR001471AP2/ERF domain
PROSITE profilePS5103220.31121186IPR001471AP2/ERF domain
CDDcd000182.05E-22121188No hitNo description
SuperFamilySSF541712.75E-14121187IPR016177DNA-binding domain
PRINTSPR003674.0E-14122133IPR001471AP2/ERF domain
PRINTSPR003674.0E-14168188IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MSTERDGELF EEGYMRMLSG FDREEEMSVM VSALARAMAG DVDEEAVGGG NXXXXXXXSS  60
SACKRGREEQ QSSVTETGPM MGTGMPSSTE GAAXXXXXXX XXYYSPTNQS XXXXXXXXDR  120
KYRGVRRRPW GKWAAEIRDP YKAXXXXXXX XXXXXXXXFD RAEDAARAYD EAAFRFRGSK  180
AKLNFPENVI VHHPQPQFQS QDFAAQTQGF GYQPSSSSLY YQHPTEPGSQ TGGPSGFSWT  240
YSGHEPTSGD HI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-15120189466ATERF1
3gcc_A1e-15120189466ATERF1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090449.12e-36ethylene-responsive transcription factor ABR1-like
TrEMBLA0A2G9IAR96e-40A0A2G9IAR9_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165