PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100231160061

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

AP2

Protein Properties

Length: 343aa MW: 38748.1 Da PI: 9.1385

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100231160061	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.9	2.1e-17	30	79	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Ote100231160061\|100231160061 30 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 79 78*****************......55**********************998 PP
2	AP2	44.3	4.4e-14	122	172	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f+t+ eAa+a+++a+ k +g Ote100231160061\|100231160061 122 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDTEIEAARAYDKAAIKCNG 172 89******.7**...5...334336******99********99776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.4E-9	30	79	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	9.81E-16	30	87	IPR016177	DNA-binding domain
PROSITE profile	PS51032	17.609	31	87	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	6.2E-17	31	87	IPR001471	AP2/ERF domain
SMART	SM00380	2.9E-31	31	93	IPR001471	AP2/ERF domain
CDD	cd00018	7.56E-11	31	86	No hit	No description
SuperFamily	SSF54171	3.27E-17	122	181	IPR016177	DNA-binding domain
Pfam	PF00847	1.2E-9	122	172	IPR001471	AP2/ERF domain
CDD	cd00018	8.28E-26	122	182	No hit	No description
Gene3D	G3DSA:3.30.730.10	1.1E-16	123	180	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	15.738	123	180	IPR001471	AP2/ERF domain
SMART	SM00380	9.0E-33	123	186	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.9E-6	124	135	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.9E-6	162	182	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MMEQRIIAQE QQQKRQLVKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF 60 DTAHAAARAY DRAAIKFRGL DADINFVASD YDEDLKQMKN LTKEEFVHIL RRQSTGFSRG 120 SSKYRGVTLH KCGRWEARMG QLLGKKYIYL GLFDTEIEAA RAYDKAAIKC NGREAVTNFE 180 PSTYEGELSS EAAIRDGENN NLNLNLSIAP PEAHCETHHM EIESFQTHYG SNNLSETNVK 240 SPASSSVAAQ LSHVHGEYPY IWRGVNSRLP PVYTQGAAIE NVVELDSSAS WRRNSPINPH 300 GDHPLPLLST AASSGFATSS AAIHQLPFST RSPDHYGSHY YWR

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MMEQRIIAQE QQQKRQLVKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF  60
DTAHAAARAY DRAAIKFRGL DADINFVASD YDEDLKQMKN LTKEEFVHIL RRQSTGFSRG  120
SSKYRGVTLH KCGRWEARMG QLLGKKYIYL GLFDTEIEAA RAYDKAAIKC NGREAVTNFE  180
PSTYEGELSS EAAIRDGENN NLNLNLSIAP PEAHCETHHM EIESFQTHYG SNNLSETNVK  240
SPASSSVAAQ LSHVHGEYPY IWRGVNSRLP PVYTQGAAIE NVVELDSSAS WRRNSPINPH  300
GDHPLPLLST AASSGFATSS AAIHQLPFST RSPDHYGSHY YWR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250\|UniProtKB:P47927, ECO:0000269\|PubMed:22003982, ECO:0000269\|PubMed:28066457, ECO:0000305\|PubMed:26631749}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269\|PubMed:22003982, ECO:0000305\|PubMed:20017947, ECO:0000305\|PubMed:26631749, ECO:0000305\|PubMed:28066457}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011077383.1	1e-142	floral homeotic protein APETALA 2
Swissprot	Q84TB5	1e-104	AP22_ORYSJ; APETALA2-like protein 2
TrEMBL	A0A4D9AGC6	1e-156	A0A4D9AGC6_SALSN; AP2-like factor, euAP2 lineage
STRING	XP_009606014.1	1e-133	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA591	24	116

Publications ? help Back to Top
Lee DY,An G Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice. Plant J., 2012. 69(3): p. 445-61 [PMID:22003982] Wang L, et al. Coordinated regulation of vegetative and reproductive branching in rice. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9 [PMID:26631749] Dai Z,Wang J,Zhu M,Miao X,Shi Z OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice. Front Plant Sci, 2016. 7: p. 1891 [PMID:28066457]