PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100231140022
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family SBP
Protein Properties Length: 383aa    MW: 41878.7 Da    PI: 6.4332
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100231140022genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1001.9e-31125194177
                                   --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                           SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                                   +Cqv gC++dls+ k+yh+rhkvC+vhsk++vv+v+g+       C rfh l efDe+krsCr+rLa+hnerrrk+q
  Ote100231140022|100231140022 125 TCQVYGCNKDLSSSKDYHKRHKVCDVHSKTAVVIVNGI-------CQRFHILAEFDEGKRSCRKRLAGHNERRRKPQ 194
                                   6***********************************97.......6799**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.5E-23119180IPR004333Transcription factor, SBP-box
PROSITE profilePS5114125.709123193IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.57E-31124198IPR004333Transcription factor, SBP-box
PfamPF031102.0E-21126192IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MESLSCGFEG RALLFADDSD FVADGPTRSR NLLKKWDGED EVDSTGFIEP LLPNSINNSF  60
LGDQCLESNG DDSKDDSPSP ANTAQDGKYA AANLLSVGNS VLSSPEPSVS AKRAKIGDSQ  120
SQVPTCQVYG CNKDLSSSKD YHKRHKVCDV HSKTAVVIVN GICQRFHILA EFDEGKRSCR  180
KRLAGHNERR RKPQFNTYLG STYFTTDASK SLFLSTVVPN GFFGLQFKEL TDHRRHLMLE  240
EEEALAVDVK LGQSLPKSVL RFHGMGKQYP SKNCLNAPSL SEFYSSSDSA CALSLLSARK  300
QNSLSNSAAA GIPMDGPLVS EATPQNSATS FASDYDGKTA VLPQGTNTVN LLELSLHLHR  360
VEHQKFYGQI KMENDNFCDS TIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-22121192684squamosa promoter binding protein-like 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070914.21e-141squamosa promoter-binding-like protein 6
TrEMBLA0A2G9FVV61e-90A0A2G9FVV6_9LAMI; Uncharacterized protein
STRINGPGSC0003DMT4000727457e-66(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68311933