PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100230560041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family TALE
Protein Properties Length: 262aa    MW: 29932.8 Da    PI: 6.5139
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100230560041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.25.6e-082112442154
                                   HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                      Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                   k +yp++e++++L +++gL+ +q+ +WF N+R +
  Ote100230560041|100230560041 211 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 244
                                   469*****************************87 PP
2ELK28.14.8e-10165186122
                           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                   ELKh+L+++Y++++ ++++E++
  Ote100230560041|100230560041 165 ELKHELKQGYKEKIFDIREEIL 186
                                   9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037901.6E-17142IPR005540KNOX1
SMARTSM012551.5E-17143IPR005540KNOX1
SMARTSM012561.6E-2553108IPR005541KNOX2
PfamPF037919.9E-1957107IPR005541KNOX2
SMARTSM011880.0035165186IPR005539ELK domain
PROSITE profilePS512139.812165185IPR005539ELK domain
PfamPF037898.2E-5165186IPR005539ELK domain
PROSITE profilePS5007111.71185248IPR001356Homeobox domain
SuperFamilySSF466892.27E-16187251IPR009057Homeodomain-like
SMARTSM003895.2E-11187252IPR001356Homeobox domain
CDDcd000866.31E-12188249No hitNo description
Gene3DG3DSA:1.10.10.609.0E-26192249IPR009057Homeodomain-like
PfamPF059206.0E-18205244IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
CKADILNHPL YEQLLSAHVA CLRIATPVDQ LPKIDAQLAQ SHQVVAKYSV LGHGQPPLDD  60
KDLDNFMTHY VLLLTSFKEQ LQQHVRVHAM EAVMACWELE QSLQSLTGVA PGEGTGATMS  120
DDDDEQADSE MNLFDESLDG PDSMGFGPLV PTESERSLME RVKQELKHEL KQGYKEKIFD  180
IREEILRKRR AGKLPGDTTS MLKAWWQSHS KWPYPTEEDK ARLVQETGLQ LKQINNWFIN  240
QRKRNWHSNP SSSSSQKSKR KR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A2e-12188253873Homeobox protein PKNOX1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay have a role to play in formative events in ovule and embryo morphogenesis.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084049.10.0homeobox protein knotted-1-like LET12 isoform X1
RefseqXP_011084050.10.0homeobox protein knotted-1-like LET12 isoform X2
SwissprotO223001e-165LET12_SOLLC; Homeobox protein knotted-1-like LET12
TrEMBLA0A2Z7CAA71e-179A0A2Z7CAA7_9LAMI; Homeobox protein knotted-1-like 13
STRINGVIT_11s0118g00800.t011e-170(Vitis vinifera)
STRINGGSMUA_Achr7P05170_0011e-170(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14322472