PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100230450021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

GRAS

Protein Properties

Length: 320aa MW: 35978.3 Da PI: 8.0058

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100230450021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	321.1	2.3e-98	22	319	74	374
GRAS 74 sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegppslRiTgvgsp 150 s+++ al+l +e++P+++f+h++aN+aIlea+ege+ vH++D++++ +G QW +L++ La+Rp++ ++lRiT+vg Ote100230450021\|100230450021 22 SEKREEALRLVYEMCPYIQFGHFVANSAILEAFEGERLVHVVDLGMTlglpHGHQWQNLIRGLAKRPGPVARLRITAVGL- 101 67788899*********************************98873333788**********************. PP GRAS 151 esgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklv 231 +e+l++ g+ L+ +A +gv++ef v v+++le+l++++++v pgE+l+Vn++lqlh +++es + +vL+++ Ote100230450021\|100230450021 102 ---CSERLRAAGDELETYAFGVGVKLEFVV-VESNLESLKPQDIKVTPGEVLVVNSILQLHCVVKESRGALN---SVLQII 175 ...9*********************9.79***************************88877777...8* PP GRAS 232 kslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhe 310 +lsPkv+v+ve n++ Fl rf+eal+yysa+fdsl+a lp+ + +r+k+E++++++ei+n+v+ceg +r+erhe Ote100230450021\|100230450021 176 HELSPKVLVLVEXXXXXxxNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTKRVKMEQFYFAEEIKNIVSCEGPARVERHE 256 ********9965556********************************************************** PP GRAS 311 tlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ +Wr+r+++aGF+pvpl+ +++qak l+ v+ +gy++ ee+g+lvlgWk++p++++S+W+ Ote100230450021\|100230450021 257 RVDQWRRRMSRAGFGPVPLK--MVAQAKQWLSSVSgCEGYTIVEEKGCLVLGWKSKPIIAASCWK 319 ***************6..6889*****9**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	49.352	1	300	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.0E-96	22	319	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MVQPLGTVGY VWPKMNIMDA ASEKREEALR LVYEMCPYIQ FGHFVANSAI LEAFEGERLV 60 HVVDLGMTLG LPHGHQWQNL IRGLAKRPGP VARLRITAVG LCSERLRAAG DELETYAFGV 120 GVKLEFVVVE SNLESLKPQD IKVTPGEVLV VNSILQLHCV VKESRGALNS VLQIIHELSP 180 KVLVLVEXXX XXXXNGPFFL GRFMEALHYY SAIFDSLDAM LPKYDTKRVK MEQFYFAEEI 240 KNIVSCEGPA RVERHERVDQ WRRRMSRAGF GPVPLKMVAQ AKQWLSSVSG CEGYTIVEEK 300 GCLVLGWKSK PIIAASCWKC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-48	28	318	98	378	Protein SCARECROW
5b3h_A	3e-48	28	318	97	377	Protein SCARECROW
5b3h_D	3e-48	28	318	97	377	Protein SCARECROW
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011084871.1	0.0	DELLA protein RGL1-like
TrEMBL	A0A2G9FYC4	0.0	A0A2G9FYC4_9LAMI; Uncharacterized protein
STRING	Migut.D01232.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8167	21	30