PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100229790061
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family TALE
Protein Properties Length: 238aa    MW: 26177.4 Da    PI: 9.5183
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100229790061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.14e-101031401954
                                   HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                      Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                   Fe   ++yp+ +++  LAk++gL+ +qV++WF N R +
  Ote100229790061|100229790061 103 FEHflHPYPTDTDKVMLAKQTGLSRNQVSNWFINARVR 140
                                   664459******************************98 PP
2BELL55.21.8e-181433072
                          BELL 30 lqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
                                  +q+ +++Fe vagl +a+p+++lAlka+S+hFrcLk+ai++q+
  Ote100229790061|100229790061  1 MQAAVAAFESVAGLSNAAPFANLALKAMSKHFRCLKNAITDQL 43
                                  99**************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075268.1E-14140IPR006563POX domain
PROSITE profilePS5007112.09881144IPR001356Homeobox domain
CDDcd000863.03E-1384145No hitNo description
SMARTSM003895.8E-1084148IPR001356Homeobox domain
SuperFamilySSF466891.03E-1786151IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-2887148IPR009057Homeodomain-like
PfamPF059203.1E-19101140IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MQAAVAAFES VAGLSNAAPF ANLALKAMSK HFRCLKNAIT DQLQFTSKPH GKSSSDRGEA  60
RPDNPGRSSY GHRAFHGFVD QPVWRPQRGL PERAVTVLRA WLFEHFLHPY PTDTDKVMLA  120
KQTGLSRNQV SNWFINARVR LWKPMVEEIH MLETRQAQKP SQAEDQPNDH RLPTSCSIDH  180
SHLGVSGGGG VSLTLGLHQN GVGLPDSYPL NAARRFGLDS EGEGYVASGF AAQNHQFG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A8e-1790148563Homeobox protein Meis2
4xrm_B8e-1790148563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094923.11e-124BEL1-like homeodomain protein 9 isoform X1
RefseqXP_011094924.11e-125BEL1-like homeodomain protein 9 isoform X2
SwissprotQ9LZM89e-73BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLA0A2G9H2F51e-122A0A2G9H2F5_9LAMI; Transcription factor MEIS1
STRINGVIT_08s0007g01290.t011e-103(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35202237
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]