PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100229580171 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | AP2 | ||||||||
Protein Properties | Length: 347aa MW: 38283.7 Da PI: 8.6781 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.2 | 1.7e-17 | 109 | 158 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Ote100229580171|100229580171 109 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTALAAARAYDRAAIKFRG 158 78*******************......55************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.7E-9 | 109 | 158 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-15 | 109 | 168 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.81E-12 | 110 | 168 | No hit | No description |
SMART | SM00380 | 3.7E-31 | 110 | 172 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.28 | 110 | 166 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-17 | 110 | 167 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
PIPLSXXXXX XXXXXFDLNL TLDSSDGHKL DANNCDGWSR EASPANGGVE SSSSNDDACS 60 RRAAASALNF DRGEPAAFSS PRVAVQQEVQ QVQVVQARKS RRGPRSRSSQ YRGVTFYRRT 120 GRWESHIWDC GKQVYLGGFD TALAAARAYD RAAIKFRGVE ADINFNHSDY DDMKPMMNLS 180 KEEFVQALRK QSNVFSRGSC KYRAQNPGIK AYDKGAIMCN GETTLEPRYD KSQHDLNLNL 240 GMPASARSPK ESGWLDSLKL HLGSSASNGG VPVRSRHPSL NPQFVPNNEE RETSASQLEV 300 GNLGERVHGH YQTAANSTAA SSRFSSEETA RNTLASYPWI NPYLPPS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:A0A0N7KMH0, ECO:0000250|UniProtKB:P47927}. | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011089376.1 | 1e-64 | ethylene-responsive transcription factor RAP2-7-like isoform X2 | ||||
Swissprot | A0A0N7KMH0 | 9e-47 | AP24_ORYSJ; APETALA2-like protein 4 | ||||
Swissprot | B8B0I8 | 1e-46 | AP24_ORYSI; APETALA2-like protein 4 | ||||
TrEMBL | A0A4D9AJE7 | 6e-89 | A0A4D9AJE7_SALSN; AP2-like factor, euAP2 lineage | ||||
STRING | Lus10019905 | 1e-55 | (Linum usitatissimum) | ||||
STRING | Lus10026477 | 4e-57 | (Linum usitatissimum) |
Publications ? help Back to Top | |||
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