PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ote100228620011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 86aa MW: 9800.97 Da PI: 7.6873 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32 | 3e-10 | 10 | 55 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 g+WT++E +l+ +a +++ + +W+ +ar +g g++++++k ++ Ote100228620011|100228620011 10 GSWTAQENKLFEKALARFDREtpdRWHNVARAVGGGKSAEEVKKHY 55 79*****************88************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.307 | 7 | 63 | IPR017884 | SANT domain |
SMART | SM00717 | 7.4E-9 | 8 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-5 | 9 | 59 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.39E-12 | 10 | 67 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.3E-8 | 10 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.54E-6 | 11 | 55 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 86 aa Download sequence Send to blast |
MASSSLRAGG SWTAQENKLF EKALARFDRE TPDRWHNVAR AVGGGKSAEE VKKHYDILME 60 DLRRIESGYV PIPNYKTTTA EDEIRF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 6e-29 | 3 | 86 | 2 | 87 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012836815.1 | 2e-42 | PREDICTED: protein RADIALIS-like 4 | ||||
Swissprot | Q1A173 | 6e-32 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A2G9H3U0 | 1e-43 | A0A2G9H3U0_9LAMI; Uncharacterized protein | ||||
STRING | Migut.B00229.1.p | 9e-42 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA202 | 24 | 231 |