PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100228290231 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 215aa MW: 24543.4 Da PI: 8.8689 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 79 | 3.3e-25 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien rqv+f+kRr+g+lKKA+ELSvLCdae+ + ifs++gklye + Ote100228290231|100228290231 9 KRIENPVHRQVSFCKRRAGLLKKAKELSVLCDAEIGLFIFSPHGKLYELA 58 79*********************************************965 PP | |||||||
2 | K-box | 53.6 | 9.3e-19 | 84 | 177 | 8 | 100 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedL.esLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 +++ +++ +l++e++ +k eie+Lq+ +R + G + + +sl eL+ Le++Le + ++Rs K++++ ++i+ l++ke l Ote100228290231|100228290231 84 DNQVNNHVELKEEINLMKHEIETLQKGLRYISGGGTpGAMSLDELNVLEKHLEIWIYQVRSAKMDIMAQEIQLLKNKEGIL 164 47788999***********************98875489****************************************** PP K-box 88 qeenkaLrkklee 100 q +nk L++k+ee Ote100228290231|100228290231 165 QAANKHLQEKIEE 177 ***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-35 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-27 | 1 | 74 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.548 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.18E-38 | 2 | 75 | No hit | No description |
PRINTS | PR00404 | 3.3E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-22 | 10 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 8.2E-20 | 86 | 175 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.527 | 90 | 181 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MARGKIQMKR IENPVHRQVS FCKRRAGLLK KAKELSVLCD AEIGLFIFSP HGKLYELATK 60 GCMQSLIEKY TKHNKEIRAG GAKDNQVNNH VELKEEINLM KHEIETLQKG LRYISGGGTP 120 GAMSLDELNV LEKHLEIWIY QVRSAKMDIM AQEIQLLKNK EGILQAANKH LQEKIEEQYG 180 MIGLPPMLAD IGCXXXXXXX XXXXXXIPNQ EIYQF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-17 | 1 | 74 | 1 | 73 | MEF2C |
5f28_B | 3e-17 | 1 | 74 | 1 | 73 | MEF2C |
5f28_C | 3e-17 | 1 | 74 | 1 | 73 | MEF2C |
5f28_D | 3e-17 | 1 | 74 | 1 | 73 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011095942.1 | 1e-100 | agamous-like MADS-box protein AGL12 isoform X1 | ||||
Swissprot | A2YQK9 | 1e-72 | MAD26_ORYSI; MADS-box transcription factor 26 | ||||
Swissprot | Q0J8G8 | 1e-72 | MAD26_ORYSJ; MADS-box transcription factor 26 | ||||
TrEMBL | A0A4D8YCF4 | 1e-109 | A0A4D8YCF4_SALSN; MADS-box transcription factor, plant | ||||
STRING | Migut.C01339.1.p | 6e-97 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9810 | 20 | 24 |
Publications ? help Back to Top | |||
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