PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100228250221

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NAC

Protein Properties

Length: 233aa MW: 27047 Da PI: 5.3814

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100228250221	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.1	1.4e-52	6	123	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhPtdeelv++yLk+k++g ++el ++i+evd+yk+ePw+L ewyfF +rd+ky++g r+nrat++g Ote100228250221\|100228250221 6 LPPGFRFHPTDEELVNYYLKRKIQGLEIEL-DIIPEVDLYKCEPWELA--------EWYFFGPRDRKYPNGFRTNRATRAG 77 79**************************.99**********5........8******************** PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 yWk+tgkd++v s +++++g+kktLv+y+grap+g +tdWvmheyrl Ote100228250221\|100228250221 78 YWKSTGKDRRVSS-QNRAIGMKKTLVYYRGRAPQGIRTDWVMHEYRL 123 ********9.8999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-60	4	147	IPR003441	NAC domain
PROSITE profile	PS51005	55.516	6	146	IPR003441	NAC domain
Pfam	PF02365	4.6E-30	7	123	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MAPVGLPPGF RFHPTDEELV NYYLKRKIQG LEIELDIIPE VDLYKCEPWE LAEWYFFGPR 60 DRKYPNGFRT NRATRAGYWK STGKDRRVSS QNRAIGMKKT LVYYRGRAPQ GIRTDWVMHE 120 YRLDDKEWED TSGIQDSYAL CRVFKKNGLC SEVEELGQSS SIPLLDHYMQ GVSNEHETMS 180 PDFPLASSST ICMXXXXXXX XXXSWMQFIT DDVWCSSTQA FGGEEMSHMG FTN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-53	1	147	12	166	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-53	1	147	12	166	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-53	1	147	12	166	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-53	1	147	12	166	NO APICAL MERISTEM PROTEIN
4dul_A	7e-53	1	147	12	166	NAC domain-containing protein 19
4dul_B	7e-53	1	147	12	166	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00363	DAP	Transfer from AT3G17730	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269\|PubMed:25081480}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012855689.1	1e-145	PREDICTED: NAC domain-containing protein 86 isoform X2
Swissprot	A4VCM0	3e-80	NAC45_ARATH; NAC domain-containing protein 45
TrEMBL	A0A068TRH5	1e-131	A0A068TRH5_COFCA; Uncharacterized protein
STRING	Migut.O00243.1.p	1e-143	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4621	24	42

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]