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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Ote100228090061 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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| Family | MYB_related | ||||||||
| Protein Properties | Length: 488aa MW: 53078.9 Da PI: 4.6562 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 52 | 1.6e-16 | 62 | 105 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
+g++T+eE+ l++++++++G++ W++ a++++ gRt++++k++w++
Ote100228090061|100228090061 62 KGAFTAEEERLIIELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 105
799*******************.*********.***********96 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.10.60 | 2.9E-8 | 47 | 68 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 1.29E-19 | 47 | 111 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS51294 | 26.42 | 57 | 111 | IPR017930 | Myb domain |
| SMART | SM00717 | 3.8E-17 | 61 | 109 | IPR001005 | SANT/Myb domain |
| Pfam | PF00249 | 1.6E-15 | 62 | 105 | IPR001005 | SANT/Myb domain |
| CDD | cd00167 | 1.07E-12 | 64 | 105 | No hit | No description |
| Gene3D | G3DSA:1.10.10.60 | 8.6E-23 | 69 | 108 | IPR009057 | Homeodomain-like |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 488 aa Download sequence Send to blast |
TAESEDGVLS ADSPLSNDGD NFGGSSNAGV VLKKGPWTSA EDAILVDCRL RWANHLRPNL 60 KKGAFTAEEE RLIIELHAKM GNKWARMAAH LPGRTDNEIK NYWNTRIKRR QRAGLPLYPP 120 DLCLQSLPEN QQQLNLPRIY GGDKACHDIL EGNGCRAPDI MFDSYNILAF APEISGIPAS 180 ISMGNGFASP QAYGFVPQNI GVLSHSQEPD EPMSDYGSSA VNEATTLNST RTDSCVNKSL 240 QSFGVCFPFA PEPTKKLLSS GVNHDTPFMS NVLFSASEHF ADAQKLELPX XXXYQETDLG 300 SWDPPPESFD SVVQSPLSGP LPSHCPSPGS SGLLEDLIYE SKTLGKSENQ PSGWATSSSA 360 SHEEITDSSA LRTCSREFKG YVDPNSPLGN SMGSFSNRYT PTIGKSLEDS LTVHHVKSEV 420 LDPSWILDDE RKVDYSRPDA ILGSCWVEQK QKGAAVGDNT SASASSWDYN SSCSWNNMPA 480 ICQMSDIP |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1a5j_A | 2e-22 | 32 | 110 | 5 | 107 | B-MYB |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. Required for anther development (PubMed:19454733, PubMed:20590996). Functions in parallel with UDT1 to regulate early anther development. Functions upstream of the transcription factor TDR and may positively regulate its transcription (PubMed:20590996). Required for pollen development. Probably required for controlling tapetal cell size and promoting tapetal programmed cell death (PCD) during anther development. Required for exine and Ubisch body formation in anthers. Interacts with the DNA specific motifs of giberrellin-up-regulated genes of anthers and regulates their expression. Positively regulates the expression of the laurate hydroxylase CYP703A3, known to be essential for the development of pollen exine and anther epicuticular layer (PubMed:19454733). Functions with MYBS1 to integrate diverse nutrient starvation and gibberellin (GA) signaling pathways during germination of grains. Sugar, nitrogen and phosphate starvation signals converge and interconnect with GA to promote the co-nuclear import of GAMYB and MYBS1, resulting in the expression of a large set of GA-inducible hydrolases, transporters and regulators that are essential for mobilization of nutrient reserves in the endosperm to support seedling growth (PubMed:22773748). {ECO:0000269|PubMed:14688295, ECO:0000269|PubMed:19454733, ECO:0000269|PubMed:20590996, ECO:0000269|PubMed:22773748}. | |||||
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: By gibberellin in aleurone cells. {ECO:0000269|PubMed:14688295}. | |||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_011091869.1 | 0.0 | transcription factor GAMYB | ||||
| Refseq | XP_011091870.1 | 0.0 | transcription factor GAMYB | ||||
| Refseq | XP_011091873.1 | 0.0 | transcription factor GAMYB | ||||
| Refseq | XP_020552724.1 | 0.0 | transcription factor GAMYB | ||||
| Swissprot | Q0JIC2 | 3e-73 | GAMYB_ORYSJ; Transcription factor GAMYB | ||||
| TrEMBL | A0A059PRV5 | 0.0 | A0A059PRV5_SALMI; MYB-related transcription factor | ||||
| STRING | Migut.O00612.1.p | 0.0 | (Erythranthe guttata) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA14059 | 7 | 13 |
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