PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100228090041

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NF-YC

Protein Properties

Length: 268aa MW: 29537.4 Da PI: 5.6542

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100228090041	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	60.4	3.7e-19	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ ++++v + ++fdfl ++v + Ote100228090041\|100228090041 6 DTRFPAARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDITVQRGAKTVSSLHLKQCVHSHNMFDFLREVVSK 86 5789************************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.9E-26	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	9.78E-21	4	88	IPR009072	Histone-fold
Pfam	PF00808	4.4E-20	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPVLVSKALE LFLQDLCDRT YDITVQRGAK 60 TVSSLHLKQC VHSHNMFDFL REVVSKVPDY GSSDAAADTS KRRKVAANEL NESDEESKKN 120 SMQDASPASN SXXXXXXXXX XXRGRASRAA EREPPRHDIE SSTNSQQSNR QISSPGRPME 180 TSEPLTEDVK VVEGGSDTRN FDLNSGLDEG SDKMASTTTA VATGEEHVGL SEMDRMAIDP 240 VHLAQLGIVD FTQLKIIAST IFDLVHLN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	3e-23	2	71	5	74	Transcription Regulator NC2 alpha chain
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020553014.1	1e-111	dr1-associated corepressor-like isoform X2
TrEMBL	A0A2G9GZU2	1e-112	A0A2G9GZU2_9LAMI; Class 2 transcription repressor NC2, alpha subunit (DRAP1)
STRING	Migut.N01867.1.p	1e-110	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7960	22	30