PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ote100227540001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 181aa MW: 21098.8 Da PI: 10.1808 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.5 | 6.1e-54 | 13 | 142 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknrat 78 +ppGfrFhPtdeel+++yLkkkv+ +k+++ +vi+evd++k+ePwdL++++k ++ewyfFs++d+ky+tg+r+nrat Ote100227540001|100227540001 13 VPPGFRFHPTDEELLHFYLKKKVTFQKFDM-DVIREVDLNKIEPWDLQERCKIgstPQNEWYFFSHKDRKYPTGSRTNRAT 92 69****************************.99**************964444222455********************** PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ++g+Wkatg+dk + + + +++g++ktLvfy+grap+g+ktdW+mheyrle Ote100227540001|100227540001 93 SAGFWKATGRDKCIRN-TFKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 142 ***************9.8899****************************85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.37E-58 | 11 | 179 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.74 | 13 | 179 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-28 | 14 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 181 aa Download sequence Send to blast |
MAAGSSSGGG GGVPPGFRFH PTDEELLHFY LKKKVTFQKF DMDVIREVDL NKIEPWDLQE 60 RCKIGSTPQN EWYFFSHKDR KYPTGSRTNR ATSAGFWKAT GRDKCIRNTF KKIGMRKTLV 120 FYRGRAPHGQ KTDWIMHEYR LEXXXXXXXX XXXXXXXXXS DNDPPPNEDG WVVCRVFKKK 180 N |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-50 | 13 | 181 | 15 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00431 | DAP | Transfer from AT4G10350 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003605666.1 | 1e-102 | protein BEARSKIN1 | ||||
Swissprot | Q9SV87 | 1e-99 | BRN2_ARATH; Protein BEARSKIN2 | ||||
TrEMBL | A0A2G9G8M7 | 1e-102 | A0A2G9G8M7_9LAMI; Uncharacterized protein | ||||
STRING | AES87863 | 1e-101 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA134 | 24 | 297 |
Publications ? help Back to Top | |||
---|---|---|---|
|