PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100225700091

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

GRAS

Protein Properties

Length: 454aa MW: 51665.9 Da PI: 7.6991

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100225700091	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	299.1	1.1e-91	73	449	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaa 80 l++lLl A+ +++++++ a + +++l +++s +g +++qR+aayf+ AL a+l+ s y+++ +++ +eel a Ote100225700091\|100225700091 73 LIHLLLFSATSINEHNTTSAAENITQLYQNVSFSGdSSVQRVAAYFADALLAKLLTRKSPFYDTVMKAPSP----EEELLA 149 689******************************679**************9**99888887....788999 PP GRAS 81 lklfsevsPilkfshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgske 156 ++ ++ vsP+++f+h+taNqaIlea+e++ +++H+iDfd+s+G+QWp+L+q+L++ + + s++iT++g s e Ote100225700091\|100225700091 150 FTDYYRVSPFYQFAHFTANQAILEAFERDqttKTLHVIDFDVSYGFQWPSLMQSLSQNAtpTNRISFKITAFGG----SVE 226 999********************99777889*****************8883345559****....9 PP GRAS 157 eleetgerLakfAeel.gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsP 236 el+et++rL fA+ + ++ fef+ + ++ ++ +L+ +++E++aVnlvl+l +l s+ ++ ++e+L+ v sl+P Ote100225700091\|100225700091 227 ELQETESRLVGFAKGFrNLVFEFRGI-VRGCKIDLETKLKKRKNETVAVNLVLHLSSLK--SL--SK-ISETLDYVSSLNP 301 ************9758***5.66666655679***********999997..33..33.569****** PP GRAS 237 kvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWre 317 +v +veqe +ns++Fl rf+e+l+ ++a+fdsl+ l+ s er ++E+ lg+ei+nv+ +++ ++ ++e W+ Ote100225700091\|100225700091 302 SIVALVEQEGTCNSNKFLPRFMESLHQFAAIFDSLDDRLSLGSGERLSIEKNHLGKEIRNVINYGEDD-EKCSLRFEAWKW 381 **********************************************************999998.667778** PP GRAS 318 rleeaGFkpvplsekaakqaklllr........kvk..sdgyrveee.sgslv.lgWkdrpLvsvSaW 373 r+e++GF v s ka++qaklll+ k++ + g++v e+ +g ++ lgW++r L+++S+W Ote100225700091\|100225700091 382 RMERCGFVGVDQSCKAVMQAKLLLKirshccsaKFGeeNGGFKVFERgEGKAIsLGWQERLLITASSW 449 *******************9733333322444423348887766666667************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	47.439	47	418	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.7E-89	73	449	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MKMMEKEEFL KLRLSLVPNN DCGREMKEIS KCSSSTWCDE GKIFALLQMR EEMLKLNHNK 60 KDESNADNKR AALIHLLLFS ATSINEHNTT SAAENITQLY QNVSFSGDSS VQRVAAYFAD 120 ALLAKLLTRK SPFYDTVMKA PSPEEELLAF TDYYRVSPFY QFAHFTANQA ILEAFERDQT 180 TKTLHVIDFD VSYGFQWPSL MQSLSQNATP TNRISFKITA FGGSVEELQE TESRLVGFAK 240 GFRNLVFEFR GIVRGCKIDL ETKLKKRKNE TVAVNLVLHL SSLKSLSKIS ETLDYVSSLN 300 PSIVALVEQE GTCNSNKFLP RFMESLHQFA AIFDSLDDRL SLGSGERLSI EKNHLGKEIR 360 NVINYGEDDE KCSLRFEAWK WRMERCGFVG VDQSCKAVMQ AKLLLKIRSH CCSAKFGEEN 420 GGFKVFERGE GKAISLGWQE RLLITASSWY YRNS

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MKMMEKEEFL KLRLSLVPNN DCGREMKEIS KCSSSTWCDE GKIFALLQMR EEMLKLNHNK  60
KDESNADNKR AALIHLLLFS ATSINEHNTT SAAENITQLY QNVSFSGDSS VQRVAAYFAD  120
ALLAKLLTRK SPFYDTVMKA PSPEEELLAF TDYYRVSPFY QFAHFTANQA ILEAFERDQT  180
TKTLHVIDFD VSYGFQWPSL MQSLSQNATP TNRISFKITA FGGSVEELQE TESRLVGFAK  240
GFRNLVFEFR GIVRGCKIDL ETKLKKRKNE TVAVNLVLHL SSLKSLSKIS ETLDYVSSLN  300
PSIVALVEQE GTCNSNKFLP RFMESLHQFA AIFDSLDDRL SLGSGERLSI EKNHLGKEIR  360
NVINYGEDDE KCSLRFEAWK WRMERCGFVG VDQSCKAVMQ AKLLLKIRSH CCSAKFGEEN  420
GGFKVFERGE GKAISLGWQE RLLITASSWY YRNS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	3e-55	81	453	26	381	Protein SCARECROW
5b3h_D	3e-55	81	453	26	381	Protein SCARECROW
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020547495.1	0.0	scarecrow-like protein 21
TrEMBL	A0A4D9BX84	0.0	A0A4D9BX84_SALSN; DELLA protein
STRING	Migut.N03341.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12354	18	23