PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100225250081
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ERF
Protein Properties Length: 262aa    MW: 29784.7 Da    PI: 6.8547
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100225250081genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.16e-2088137255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f++ae Aa a+++a++k++g
  Ote100225250081|100225250081  88 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDSAEAAALAYDEAALKFKG 137
                                   7********.**********94....45************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-3287146IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-2288146IPR016177DNA-binding domain
CDDcd000183.46E-2188146No hitNo description
PROSITE profilePS5103224.84388145IPR001471AP2/ERF domain
SMARTSM003805.3E-3888151IPR001471AP2/ERF domain
PfamPF008476.0E-1488137IPR001471AP2/ERF domain
PRINTSPR003674.9E-1189100IPR001471AP2/ERF domain
PRINTSPR003674.9E-11111127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MVDPRHGKRP LLLNESEEDS FLPIYSSERS QLDMSAMVTA LSQVMGYSGE APPPEAPHQD  60
STPLHSDHHS STQTQGSGSG GMNPRRRHYR GVRQRPWGKW AAEIRDPKKA ARVWLGTFDS  120
AEAAALAYDE AALKFKGSKA KLNFPERVQG RTQFGYLTNX XXXXXXXXXX XHQPPHFQQN  180
YPINVHHYAD LLHTNNPSFN YGDSSSYGGT GSFVTTPTPN ITPLSEHQNF QDHQQEQDFL  240
GFQQSSENWE DFENKSTRRY FY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2587148163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-2587148466ATERF1
3gcc_A2e-2587148466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016549660.18e-59PREDICTED: ethylene-responsive transcription factor ERF114-like, partial
SwissprotQ9FH547e-45EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A4D9AAM09e-70A0A4D9AAM0_SALSN; Uncharacterized protein
STRINGXP_008356833.11e-55(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]