PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100224730021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 257aa MW: 29275.8 Da PI: 7.2673

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100224730021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.2	1.3e-12	60	103	8	55
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er RR+++++ f++L l+P++ +++ +K++++ +Av YIk+Lq Ote100224730021\|100224730021 60 TERERRKKMRNMFATLHALIPHL----HPRADKSTTVDEAVVYIKKLQ 103 7*******************9....8*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.913	52	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.62E-14	55	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-12	57	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.90E-11	57	106	No hit	No description
SMART	SM00353	8.4E-7	60	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.4E-10	60	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MMLAMGDEER LMLWNEEQSW AFPIEENGGK MLMNKECAAA KGKKRVSGGE CDDHELHIWT 60 ERERRKKMRN MFATLHALIP HLHPRADKST TVDEAVVYIK KLQQILYNLE KQKEILMKGG 120 DANPIPAVTQ PIQSREAFLA EHGSTSQPPA VTLASPESRA SFRTWTSPNV VLNICDNDAH 180 INVVCCLTKP RILSAVVFVM DKYKLELVSA QVSTDRRTRM YMIHARANVD PQFHEVPFLV 240 EETYKQAAAE LMLWVNS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011092560.1	2e-90	transcription factor bHLH95-like
TrEMBL	A0A0H3YC60	6e-93	A0A0H3YC60_SALMI; Basic helix-loop-helix transcription factor
STRING	XP_009627647.1	1e-68	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1324	23	69