PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100224720091
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ARF
Protein Properties Length: 818aa    MW: 89786.8 Da    PI: 6.6479
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100224720091genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.68.7e-22133220183
                                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                                   f+k+lt sd++++g +++p++ ae+        + +++  ++l+ +d++g+ W++++i+r++++r++lt+GW+ Fv+a++L
  Ote100224720091|100224720091 133 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQTPPA--QELIARDLHGNGWKFRHIFRGQPKRHLLTTGWSVFVSAKRL 211
                                   99****************************97544444..48*************************************** PP

                                   -TT-EEEEE CS
                            B3  75 kegDfvvFk 83 
                                    +gD+v+F 
  Ote100224720091|100224720091 212 VAGDSVIFI 220
                                   ********6 PP
2Auxin_resp118.36.2e-39230313183
                    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWr 80 
                                   aahaa+t+s F+++YnPras+seFv++++k+ k+++ +++svGmRf+m fete+ss rr++Gt++g+ dldpvrW+nS+Wr
  Ote100224720091|100224720091 230 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYAKSVYhTSLSVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWQNSHWR 310
                                   79*********************************97899***************************************** PP

                    Auxin_resp  81 sLk 83 
                                   s+k
  Ote100224720091|100224720091 311 SVK 313
                                   985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.16E-40118227IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.0E-35126220IPR015300DNA-binding pseudobarrel domain
CDDcd100174.10E-20132219No hitNo description
PfamPF023628.2E-20133220IPR003340B3 DNA binding domain
PROSITE profilePS5086310.926133235IPR003340B3 DNA binding domain
SMARTSM010192.2E-16133246IPR003340B3 DNA binding domain
PfamPF065077.0E-34230313IPR010525Auxin response factor
SuperFamilySSF542772.06E-6678757No hitNo description
PROSITE profilePS5174522.1683767IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 818 aa     Download sequence    Send to blast
MRLSSSSSTS NGFNAQPEEG EKKCLNSELW HACAGPLVSL PQLGSRVVYF PQGHSEQVAA  60
STNKEVDGAI PNYPGLQPQL ICQLHNVTMH ADVETDEVYA QMTLQPLTPE EQKDICLLPS  120
ELGTPSKQPT NYFCKTLTAS DTSTHGGFSV PRRAAEKVFP PLDYSQTPPA QELIARDLHG  180
NGWKFRHIFR GQPKRHLLTT GWSVFVSAKR LVAGDSVIFI CMHIGLLAAA AHAAATNSRF  240
TIFYNPRASP SEFVIPLAKY AKSVYHTSLS VGMRFRMLFE TEESSVRRYM GTITGIGDLD  300
PVRWQNSHWR SVKVGWDEST AGERQPRVSL WEIEPLTTFP MYPSPFSLRL KRPWPSGLLS  360
FPGLKDGDMG LNSPMSWLRG GVGDQGIPSL NFPGLGPYMQ PRLDTSMFCL QPDIYQVMAA  420
AAMQDPSSLD PSKLSNLQFQ QNVPNISASL LQNPMLQPSF AQNLPESSAI SQAQISHQQL  480
QGHQHFINLQ QPQIHNQQIK KSTPTSLQIR SSTSQLQTFS DLIGSHMASS NNASMQSLLS  540
SFSSSKRVAL DPQIPSKVSP QFGVPRVEEL VTPNSKVADL SALLPQFHGK EFSGFNGGAH  600
SHNNLLFGVS TDSSANMMNG VSNHRSSGTD NESLSLPYAA PTFASGASSE FPLNSDMTTS  660
SCVDESGYMQ SSENGDHTNP SSGAFVKVHK SGSFGRSLDI SKFSSYGELR SSLARMFGLE  720
GLLEDPQRSG WQLVFVDREN DILLLGDDPW QEFVNNVWYI KILSPLEVQQ MGKEGLDLPN  780
SGQNHRLSAT TNSCDDYTTR KDSRSNLNGI PSVGSLEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1382133447388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022850416.10.0auxin response factor 17-like
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A4D9AEL00.0A0A4D9AEL0_SALSN; Uncharacterized protein
STRINGXP_009602213.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23682452
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]