PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100224720081 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | bHLH | ||||||||
Protein Properties | Length: 226aa MW: 26024.8 Da PI: 11.8401 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.6 | 3.3e-16 | 48 | 94 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+ l+P+a K +Ka++L +A+eY+ksLq Ote100224720081|100224720081 48 VHNLSERRRRDRINEKMRALQNLIPNA-----NKSDKASMLDEAIEYMKSLQ 94 5*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 17.517 | 44 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.81E-16 | 47 | 98 | No hit | No description |
SuperFamily | SSF47459 | 3.53E-20 | 47 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.2E-20 | 48 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-13 | 48 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.9E-16 | 50 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009585 | Biological Process | red, far-red light phototransduction | ||||
GO:0009693 | Biological Process | ethylene biosynthetic process | ||||
GO:0010244 | Biological Process | response to low fluence blue light stimulus by blue low-fluence system | ||||
GO:0010600 | Biological Process | regulation of auxin biosynthetic process | ||||
GO:0010928 | Biological Process | regulation of auxin mediated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MILIGTRGRA GTRKNQSARA MQLNWSRVRR HRRVXXXXXX XXXRVAEVHN LSERRRRDRI 60 NEKMRALQNL IPNANKSDKA SMLDEAIEYM KSLQLQIQLM WMGRGMAPMM LPGMQHYMSR 120 VGMGIGPPIP MPAIQNLMRL LRLPIVDQPM NLSQAPNQAQ IGHNPMLNPV HYQNHMQNSG 180 FQEQYANYMN FHSMQNASPQ AANMFNFGFH PNQQNPVSAP QSNSDK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00082 | ChIP-seq | Transfer from AT3G59060 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012830904.1 | 4e-80 | PREDICTED: transcription factor PIF4 | ||||
TrEMBL | A0A2G9HIV6 | 1e-85 | A0A2G9HIV6_9LAMI; Uncharacterized protein | ||||
TrEMBL | A0A2G9HIW7 | 6e-87 | A0A2G9HIW7_9LAMI; Uncharacterized protein | ||||
STRING | Migut.M00105.1.p | 2e-79 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10465 | 22 | 26 |