PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100224480041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB
Protein Properties Length: 306aa    MW: 34281.7 Da    PI: 6.0992
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100224480041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding491.4e-152875148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g W++eEde+l ++    G g+W+ Iar  g+ R++k+c++rw +yl
  Ote100224480041|100224480041 28 KGLWSPEEDEKLMNYMLTNGHGCWSDIARNAGLQRCGKSCRLRWINYL 75
                                  678*******************************************97 PP
2Myb_DNA-binding49.68.9e-1681124146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   rg+++ +E+el+++++  lG++ W+ Ia++++ gRt++++k++w++
  Ote100224480041|100224480041  81 RGAFSLQEEELIIHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 124
                                   89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.6532375IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-232378IPR009057Homeodomain-like
SuperFamilySSF466891.09E-2826122IPR009057Homeodomain-like
SMARTSM007175.3E-112777IPR001005SANT/Myb domain
PfamPF002496.1E-142875IPR001005SANT/Myb domain
CDDcd001673.72E-93175No hitNo description
PROSITE profilePS5129424.69676130IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.8E-2579131IPR009057Homeodomain-like
SMARTSM007173.5E-1580128IPR001005SANT/Myb domain
PfamPF002492.9E-1481124IPR001005SANT/Myb domain
CDDcd001674.39E-1083123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MRKPDHAIMA KEKPSNNGDN NTKVKLRKGL WSPEEDEKLM NYMLTNGHGC WSDIARNAGL  60
QRCGKSCRLR WINYLRPDLK RGAFSLQEEE LIIHLHSILG NRWSQIAARL PGRTDNEIKN  120
FWNSTIKKRL KNAANNSNTT SSSSPNNSES SELKANNVGG GAILMQEYDV STCLDSSSSS  180
CFINSLNPNL LLNHGNIFEP PNSLFDLQQH DVTGVGYGSM EPYVMSSEND LSVPGLEVRG  240
VESVNCGQYX XXXXXXXXXX QSIKIEELVG IGNHWQGETF KMGELDWEGL LANVSSLPYL  300
DFQLHE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-27261305108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as molecular switch in the NAC012/SND1-mediated transcriptional network regulating secondary wall biosynthesis. Is directly activated by NAC012/SND1 and its close homologs, including NAC043/NST1, NAC066/NST2, NAC101/VND6 and NAC030/VND7. Is required for functional expression of a number of secondary wall-associated transcription factors and secondary wall biosynthetic genes involved in cellulose, xylan and lignin synthesis. Functions redundantly with MYB46 in the transcriptional regulatory cascade leading to secondary wall formation in fibers and vessels (PubMed:19808805). Transcription activator that binds to the DNA consensus sequence 5'-ACC[AT]A[AC][TC]-3', designated as the secondary wall MYB-responsive element (SMRE). Regulates directly numerous transcription factors and a number of genes involved in secondary wall biosynthesis that contain SMRE elements in their promoters (PubMed:22197883). {ECO:0000269|PubMed:19808805, ECO:0000269|PubMed:22197883}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027162565.11e-114transcription factor MYB83
SwissprotQ9C6U14e-76MYB83_ARATH; Transcription factor MYB83
TrEMBLA0A2G9I1W91e-127A0A2G9I1W9_9LAMI; Transcription factor, Myb superfamily
STRINGXP_009612035.11e-102(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Publications ? help Back to Top
  1. Vargas L, et al.
    Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants.
    Biotechnol Biofuels, 2016. 9: p. 139
    [PMID:27390589]
  2. Piya S,Kihm C,Rice JH,Baum TJ,Hewezi T
    Cooperative Regulatory Functions of miR858 and MYB83 during Cyst Nematode Parasitism.
    Plant Physiol., 2017. 174(3): p. 1897-1912
    [PMID:28512179]