PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100223480081 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | LBD | ||||||||
Protein Properties | Length: 115aa MW: 12499.9 Da PI: 4.7782 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 44.6 | 4.3e-14 | 19 | 64 | 55 | 100 |
DUF260 55 edamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +a++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el++++++ Ote100223480081|100223480081 19 IHAVNSLAYEAEARLKDPVYGCVGAISVLQRQVFNLQKELDATNAN 64 5799************************************998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 9.306 | 1 | 65 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.0E-12 | 19 | 62 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
MSAWLHIRAI FSAGGADEIH AVNSLAYEAE ARLKDPVYGC VGAISVLQRQ VFNLQKELDA 60 TNANIMRFAG GNGPPFSDDP NQPRRDPEYG SGLSDPNAGY SLPYYWPRKG EDGGI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-21 | 21 | 72 | 67 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-21 | 21 | 72 | 67 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012850821.1 | 2e-32 | PREDICTED: protein LATERAL ORGAN BOUNDARIES | ||||
Swissprot | Q8L8Q3 | 1e-23 | LBD25_ARATH; LOB domain-containing protein 25 | ||||
TrEMBL | A0A4D8ZXG9 | 1e-29 | A0A4D8ZXG9_SALSN; Uncharacterized protein | ||||
TrEMBL | A0A4D9A4C8 | 1e-29 | A0A4D9A4C8_SALSN; Uncharacterized protein | ||||
STRING | Migut.H00081.1.p | 7e-32 | (Erythranthe guttata) |
Publications ? help Back to Top | |||
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