PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100223450171 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MYB | ||||||||
Protein Properties | Length: 192aa MW: 22053.8 Da PI: 9.115 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.4 | 3.9e-19 | 19 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +l+dav +G + W+tIa++ g+ R++k+c++rw +yl Ote100223450171|100223450171 19 RGSWTAEEDRKLADAVGVHGAKKWTTIAARAGLLRCAKSCRLRWMNYL 66 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53.4 | 6.1e-17 | 72 | 117 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++l+++++k+lG++ W++Ia++++ gRt++++k++w+ +l Ote100223450171|100223450171 72 RGNMSDQEEDLIIRLHKLLGNR-WSLIAARLP-GRTDNEIKNYWNYHL 117 899*******************.*********.***********9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.414 | 14 | 70 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.5E-29 | 16 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.9E-15 | 18 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.2E-17 | 19 | 66 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-23 | 20 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.83E-10 | 21 | 66 | No hit | No description |
SMART | SM00717 | 8.0E-17 | 71 | 119 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.424 | 71 | 121 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.3E-15 | 72 | 117 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.90E-11 | 74 | 117 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-24 | 74 | 120 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0048629 | Biological Process | trichome patterning | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MADTLIKEKQ RQARKGINRG SWTAEEDRKL ADAVGVHGAK KWTTIAARAG LLRCAKSCRL 60 RWMNYLRPNI KRGNMSDQEE DLIIRLHKLL GNRWSLIAAR LPGRTDNEIK NYWNYHLRKK 120 RWEEGVLVAG ISSEEMGSKS DQQSGEEKGT SVSSKGVENS EESEAKFDDF DDFFDFSNEN 180 PSTLEWVTKF LQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-27 | 19 | 120 | 7 | 107 | B-MYB |
1h8a_C | 5e-27 | 17 | 120 | 25 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011079754.1 | 6e-95 | transcription factor MYB114-like | ||||
Swissprot | Q38850 | 5e-50 | MYB5_ARATH; Transcription repressor MYB5 | ||||
TrEMBL | A0A0K1ETI2 | 1e-93 | A0A0K1ETI2_TECGR; MYB transcription factor 3 | ||||
STRING | Migut.I01072.1.p | 1e-85 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Publications ? help Back to Top | |||
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