PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100223180031

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NF-YC

Protein Properties

Length: 298aa MW: 32984.2 Da PI: 4.7974

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100223180031	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	28.4	3.5e-09	39	86	28	75
NF-YC 28 kilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlk 75 +i++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ Ote100223180031\|100223180031 39 RIMQADEDVGKIANAVPVLVSKALELFLQDLCDRTYDITVQRGAKTVN 86 8*********************************99999888877775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	1.0E-14	38	93	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.1E-16	39	90	IPR009072	Histone-fold
SuperFamily	SSF47113	5.66E-12	41	93	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MMSKSAFPPP SLNAGDLPSS HPLLGEPTIV LYLSPADNRI MQADEDVGKI ANAVPVLVSK 60 ALELFLQDLC DRTYDITVQR GAKTVNSLHL WVCPVFSKSV EAQASRLKED ASAGVIGDMR 120 LTIRLEVVSR VPDYGHSDSA ADASKRRRVG SGESKDCDEE SKRNIMQEPC QPXXXXXXXX 180 XXXXXXXXXX XXXDREPPRL EIEPTIQQNP KQVPSPGRPM DESSEFKESP KPNHTATSDS 240 REIDLNAGLD EKPEKPVTAK SEEYPGLSEM DRMAIDPVHL AQIGSRVXXX XXXXXXXX

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012830670.1	3e-72	PREDICTED: dr1-associated corepressor-like
TrEMBL	A0A4D9AHV2	2e-80	A0A4D9AHV2_SALSN; Uncharacterized protein
STRING	Migut.N01867.1.p	1e-71	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7960	22	30