PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ote100222550001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
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Family | MYB_related | ||||||||
Protein Properties | Length: 215aa MW: 24807.7 Da PI: 6.1236 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56 | 8.9e-18 | 21 | 68 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd ll++++ +G g+W++ a+ g++Rt+k+c++rw++yl Ote100222550001|100222550001 21 RGPWTLEEDNLLIQYISCHGEGRWNSLAKFAGLKRTGKSCRLRWLNYL 68 89********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.321 | 16 | 72 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-22 | 17 | 71 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.4E-15 | 20 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.5E-17 | 21 | 68 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.85E-23 | 22 | 96 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.41E-11 | 23 | 68 | No hit | No description |
PROSITE profile | PS50090 | 3.892 | 69 | 124 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 5.1E-6 | 72 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 61 | 73 | 126 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MMMSESSTNI NRYECESEIR RGPWTLEEDN LLIQYISCHG EGRWNSLAKF AGLKRTGKSC 60 RLRWLNYLKP DIKRGNLTLH EQLLILELHS KWGNRVQKQA RQLKVDSNSK KFVEAIRTFW 120 IPRLAEEQMD QNTPSTPSPS ASTSNFQTTS NVNNLQSQNL TAASKIQSNE DNYYNAGFPS 180 YDMQEMDSQC HVAGCDWLGD DLGSTFWNTD ELWQL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-14 | 18 | 95 | 24 | 100 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011070788.1 | 1e-86 | transcription factor MYB62 | ||||
Swissprot | Q9C9G7 | 2e-55 | MYB62_ARATH; Transcription factor MYB62 | ||||
TrEMBL | A0A2G9G7R4 | 7e-84 | A0A2G9G7R4_9LAMI; Transcription factor, Myb superfamily | ||||
STRING | XP_009626235.1 | 8e-67 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Publications ? help Back to Top | |||
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