PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100222550001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 215aa    MW: 24807.7 Da    PI: 6.1236
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100222550001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding568.9e-182168148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  rg+WT eEd ll++++  +G g+W++ a+  g++Rt+k+c++rw++yl
  Ote100222550001|100222550001 21 RGPWTLEEDNLLIQYISCHGEGRWNSLAKFAGLKRTGKSCRLRWLNYL 68
                                  89********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.3211672IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-221771IPR009057Homeodomain-like
SMARTSM007177.4E-152070IPR001005SANT/Myb domain
PfamPF002497.5E-172168IPR001005SANT/Myb domain
SuperFamilySSF466895.85E-232296IPR009057Homeodomain-like
CDDcd001672.41E-112368No hitNo description
PROSITE profilePS500903.89269124IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.1E-672104IPR009057Homeodomain-like
SMARTSM007176173126IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MMMSESSTNI NRYECESEIR RGPWTLEEDN LLIQYISCHG EGRWNSLAKF AGLKRTGKSC  60
RLRWLNYLKP DIKRGNLTLH EQLLILELHS KWGNRVQKQA RQLKVDSNSK KFVEAIRTFW  120
IPRLAEEQMD QNTPSTPSPS ASTSNFQTTS NVNNLQSQNL TAASKIQSNE DNYYNAGFPS  180
YDMQEMDSQC HVAGCDWLGD DLGSTFWNTD ELWQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-14189524100MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070788.11e-86transcription factor MYB62
SwissprotQ9C9G72e-55MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A2G9G7R47e-84A0A2G9G7R4_9LAMI; Transcription factor, Myb superfamily
STRINGXP_009626235.18e-67(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]